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  5. PSME_00042785-RA

PSME_00042785-RA


Description : (at3g03740 : 159.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042785-RA
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Bradi4g23747 No alias BTB-POZ and MATH domain 2 0.04 Orthogroups_2024-Update
HORVU1Hr1G039140.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G107980.3 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00017885-RA No alias (at3g03740 : 169.0) BTB-POZ and MATH domain 4 (BPM4);... 0.05 Orthogroups_2024-Update
Seita.7G010200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G498600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.007G080900.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 47 120
IPR000210 BTB/POZ_dom 256 349
IPR000210 BTB/POZ_dom 168 226
No external refs found!