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  5. PSME_00042800-RA

PSME_00042800-RA


Description : (at5g09810 : 581.0) Member of Actin gene family.Mutants are defective in germination and root growth.; actin 7 (ACT7); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15241 Blast hits to 14839 proteins in 3047 species: Archae - 8; Bacteria - 21; Metazoa - 5732; Fungi - 5247; Plants - 1603; Viruses - 2; Other Eukaryotes - 2628 (source: NCBI BLink). & (p30173|act13_soltu : 579.0) Actin-101 - Solanum tuberosum (Potato) & (reliability: 1054.0) & (original description: no original description)


Gene families : OG_42_0000262 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000262_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042800-RA
Cluster HCCA clusters: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
Brara.C01891.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
GRMZM2G047055 No alias actin-11 0.03 Orthogroups_2024-Update
HORVU1Hr1G074350.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G083370.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G083380.4 No alias actin filament protein 0.03 Orthogroups_2024-Update
LOC_Os10g36650 No alias actin, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g06390 No alias actin, putative, expressed 0.03 Orthogroups_2024-Update
MA_135063g0010 No alias (at5g09810 : 697.0) Member of Actin gene family.Mutants... 0.03 Orthogroups_2024-Update
PSME_00045427-RA No alias (o81221|act_goshi : 556.0) Actin - Gossypium hirsutum... 0.05 Orthogroups_2024-Update
PSME_00047956-RA No alias (at5g09810 : 704.0) Member of Actin gene family.Mutants... 0.05 Orthogroups_2024-Update
PSME_00050983-RA No alias (p17299|act3_orysa : 573.0) Actin-3 - Oryza sativa... 0.04 Orthogroups_2024-Update
Seita.5G464000.1 No alias actin filament protein 0.04 Orthogroups_2024-Update
Sobic.009G006100.1 No alias actin filament protein 0.04 Orthogroups_2024-Update
Solyc06g076090 No alias Actin (AHRD V3.3 *** ACT1_TOBAC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004555 alpha,alpha-trehalase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015927 trehalase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004000 Actin 93 413
No external refs found!