PSME_00042813-RA

Description : (q689g9|prr1_orysa : 289.0) Two-component response regulator-like PRR1 (Pseudo-response regulator 1) (OsPRR1) - Oryza sativa (Rice) & (at5g61380 : 278.0) Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.; TIMING OF CAB EXPRESSION 1 (TOC1); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 556.0) & (original description: no original description)

Gene families : OG_42_0004519 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004519_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00042813-RA
Cluster	HCCA clusters: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method
438647	No alias	CCT motif -containing response regulator protein	0.02	Orthogroups_2024-Update
At5g61380	No alias	Two-component response regulator-like APRR1...	0.03	Orthogroups_2024-Update
GRMZM2G020081	No alias	CCT motif -containing response regulator protein	0.02	Orthogroups_2024-Update
GRMZM2G148453	No alias	CCT motif -containing response regulator protein	0.02	Orthogroups_2024-Update
Glyma.17G102200	No alias	CCT motif -containing response regulator protein	0.03	Orthogroups_2024-Update
Kfl00059_0230	kfl00059_0230_v1.1	(at5g61380 : 198.0) Pseudo response regulator involved...	0.02	Orthogroups_2024-Update
Solyc03g115770	No alias	Timing of cab expression 1/pseudo-response regulator 1...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Predicted GO
MF	GO:0003678	DNA helicase activity	IEP	Predicted GO
MF	GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	IEP	Predicted GO
MF	GO:0004386	helicase activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0005102	signaling receptor binding	IEP	Predicted GO
CC	GO:0005875	microtubule associated complex	IEP	Predicted GO
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predicted GO
BP	GO:0007017	microtubule-based process	IEP	Predicted GO
BP	GO:0007049	cell cycle	IEP	Predicted GO
BP	GO:0007051	spindle organization	IEP	Predicted GO
MF	GO:0008083	growth factor activity	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
BP	GO:0008283	cell proliferation	IEP	Predicted GO
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
MF	GO:0016778	diphosphotransferase activity	IEP	Predicted GO
CC	GO:0030120	vesicle coat	IEP	Predicted GO
CC	GO:0030126	COPI vesicle coat	IEP	Predicted GO
MF	GO:0030545	receptor regulator activity	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
CC	GO:0044433	cytoplasmic vesicle part	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
MF	GO:0048018	receptor ligand activity	IEP	Predicted GO
MF	GO:0050290	sphingomyelin phosphodiesterase D activity	IEP	Predicted GO
BP	GO:0051225	spindle assembly	IEP	Predicted GO
BP	GO:0051321	meiotic cell cycle	IEP	Predicted GO
CC	GO:0070652	HAUS complex	IEP	Predicted GO
BP	GO:0070925	organelle assembly	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001789	Sig_transdc_resp-reg_receiver	23	134
IPR010402	CCT_domain	471	513

External Links

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PSME_00042813-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation