1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00042816-RA

PSME_00042816-RA


Description : (at2g24130 : 468.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47570.1); Has 211952 Blast hits to 136025 proteins in 5092 species: Archae - 179; Bacteria - 23123; Metazoa - 70875; Fungi - 10647; Plants - 82602; Viruses - 325; Other Eukaryotes - 24201 (source: NCBI BLink). & (p93194|rpk1_iponi : 292.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 936.0) & (original description: no original description)


Gene families : OG_42_0000007 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042816-RA
Cluster HCCA clusters: Cluster_456

Target Alias Description ECC score Gene Family Method Actions
Bradi1g01432 No alias Leucine-rich repeat protein kinase family protein 0.05 Orthogroups_2024-Update
Bradi1g01985 No alias EF-TU receptor 0.02 Orthogroups_2024-Update
Bradi1g37304 No alias Leucine-rich repeat protein kinase family protein 0.02 Orthogroups_2024-Update
Bradi1g47990 No alias Leucine-rich repeat protein kinase family protein 0.03 Orthogroups_2024-Update
Bradi4g11740 No alias Leucine-rich repeat protein kinase family protein 0.01 Orthogroups_2024-Update
Bradi4g12990 No alias Leucine-rich repeat protein kinase family protein 0.01 Orthogroups_2024-Update
Bradi4g16068 No alias Leucine-rich repeat protein kinase family protein 0.02 Orthogroups_2024-Update
Bradi4g24410 No alias Leucine-rich repeat protein kinase family protein 0.02 Orthogroups_2024-Update
Bradi5g03977 No alias Leucine-rich repeat protein kinase family protein 0.02 Orthogroups_2024-Update
GRMZM2G162829 No alias Leucine-rich repeat protein kinase family protein 0.01 Orthogroups_2024-Update
Glyma.01G152300 No alias Leucine-rich repeat protein kinase family protein 0.02 Orthogroups_2024-Update
Glyma.03G096600 No alias Leucine-rich repeat protein kinase family protein 0.03 Orthogroups_2024-Update
Glyma.17G071700 No alias Leucine-rich receptor-like protein kinase family protein 0.01 Orthogroups_2024-Update
HORVU2Hr1G002020.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
HORVU4Hr1G085390.3 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
HORVU6Hr1G002290.6 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.01 Orthogroups_2024-Update
LOC_Os06g38340 No alias receptor-like protein kinase precursor, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g38670 No alias receptor-like protein kinase precursor, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os11g07160 No alias receptor protein kinase CLAVATA1 precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g36190 No alias receptor kinase, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os11g47180 No alias receptor-like protein kinase 2 precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10208485g0010 No alias (at2g24130 : 430.0) Leucine-rich receptor-like protein... 0.01 Orthogroups_2024-Update
MA_10328073g0010 No alias (at3g47570 : 271.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
MA_10427797g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10429806g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10431286g0010 No alias (at3g47570 : 404.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
MA_10432898g0010 No alias (at3g47570 : 310.0) Leucine-rich repeat protein kinase... 0.01 Orthogroups_2024-Update
MA_10433224g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_10436429g0010 No alias (at2g24130 : 206.0) Leucine-rich receptor-like protein... 0.05 Orthogroups_2024-Update
MA_11052g0010 No alias (at2g24130 : 556.0) Leucine-rich receptor-like protein... 0.05 Orthogroups_2024-Update
MA_11549g0010 No alias (at2g24130 : 263.0) Leucine-rich receptor-like protein... 0.03 Orthogroups_2024-Update
MA_13546g0010 No alias (at5g20480 : 145.0) Encodes a predicted leucine-rich... 0.03 Orthogroups_2024-Update
MA_150750g0010 No alias (at3g47110 : 429.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
MA_159836g0010 No alias (at2g24130 : 563.0) Leucine-rich receptor-like protein... 0.01 Orthogroups_2024-Update
MA_169541g0010 No alias (at5g46330 : 191.0) Encodes a leucine-rich repeat... 0.04 Orthogroups_2024-Update
MA_170288g0010 No alias (at3g47570 : 496.0) Leucine-rich repeat protein kinase... 0.06 Orthogroups_2024-Update
MA_19161g0010 No alias (at3g47580 : 84.0) Leucine-rich repeat protein kinase... 0.01 Orthogroups_2024-Update
MA_38414g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_61359g0010 No alias (at1g34110 : 339.0) Leucine-rich receptor-like protein... 0.04 Orthogroups_2024-Update
MA_909234g0010 No alias (at3g47570 : 99.0) Leucine-rich repeat protein kinase... 0.02 Orthogroups_2024-Update
MA_97035g0010 No alias (at2g24130 : 459.0) Leucine-rich receptor-like protein... 0.03 Orthogroups_2024-Update
MA_9815697g0010 No alias (at3g47570 : 235.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
PSME_00006646-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00009451-RA No alias (at5g46330 : 647.0) Encodes a leucine-rich repeat... 0.02 Orthogroups_2024-Update
PSME_00009453-RA No alias (at3g47570 : 507.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
PSME_00011167-RA No alias (at4g08850 : 300.0) Leucine-rich repeat receptor-like... 0.01 Orthogroups_2024-Update
PSME_00014024-RA No alias (at2g24130 : 458.0) Leucine-rich receptor-like protein... 0.02 Orthogroups_2024-Update
PSME_00014185-RA No alias (at3g24240 : 256.0) Leucine-rich repeat receptor-like... 0.01 Orthogroups_2024-Update
PSME_00020006-RA No alias (at5g44700 : 633.0) Encodes GASSHO2 (GSO2), a putative... 0.02 Orthogroups_2024-Update
PSME_00020947-RA No alias (at3g47110 : 620.0) Leucine-rich repeat protein kinase... 0.02 Orthogroups_2024-Update
PSME_00021673-RA No alias (at4g20140 : 410.0) Encodes GASSHO1 (GSO1), a putative... 0.01 Orthogroups_2024-Update
PSME_00024881-RA No alias (at3g47110 : 605.0) Leucine-rich repeat protein kinase... 0.04 Orthogroups_2024-Update
PSME_00031122-RA No alias (at5g46330 : 295.0) Encodes a leucine-rich repeat... 0.02 Orthogroups_2024-Update
PSME_00034088-RA No alias (at3g47110 : 624.0) Leucine-rich repeat protein kinase... 0.02 Orthogroups_2024-Update
PSME_00039609-RA No alias (at2g24130 : 270.0) Leucine-rich receptor-like protein... 0.02 Orthogroups_2024-Update
PSME_00039997-RA No alias (at2g24130 : 449.0) Leucine-rich receptor-like protein... 0.03 Orthogroups_2024-Update
PSME_00040056-RA No alias (at3g47570 : 210.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
PSME_00040826-RA No alias (at5g63930 : 192.0) Leucine-rich repeat protein kinase... 0.02 Orthogroups_2024-Update
PSME_00042436-RA No alias (at5g46330 : 119.0) Encodes a leucine-rich repeat... 0.02 Orthogroups_2024-Update
PSME_00042752-RA No alias (at3g47090 : 296.0) Leucine-rich repeat protein kinase... 0.01 Orthogroups_2024-Update
PSME_00043336-RA No alias (at4g20140 : 343.0) Encodes GASSHO1 (GSO1), a putative... 0.01 Orthogroups_2024-Update
PSME_00043437-RA No alias (at3g12610 : 154.0) Plays role in DNA-damage... 0.02 Orthogroups_2024-Update
PSME_00044948-RA No alias (at3g47110 : 644.0) Leucine-rich repeat protein kinase... 0.01 Orthogroups_2024-Update
PSME_00046894-RA No alias (at5g46330 : 162.0) Encodes a leucine-rich repeat... 0.02 Orthogroups_2024-Update
PSME_00048175-RA No alias (at2g24130 : 584.0) Leucine-rich receptor-like protein... 0.03 Orthogroups_2024-Update
PSME_00048631-RA No alias (at5g46330 : 300.0) Encodes a leucine-rich repeat... 0.02 Orthogroups_2024-Update
PSME_00051245-RA No alias (at1g35710 : 388.0) Protein kinase family protein with... 0.02 Orthogroups_2024-Update
PSME_00053319-RA No alias (at1g34110 : 361.0) Leucine-rich receptor-like protein... 0.02 Orthogroups_2024-Update
PSME_00054630-RA No alias (at3g47110 : 558.0) Leucine-rich repeat protein kinase... 0.01 Orthogroups_2024-Update
PSME_00054964-RA No alias (at5g62230 : 187.0) Encodes a receptor-like kinase that,... 0.02 Orthogroups_2024-Update
PSME_00055160-RA No alias (at5g46330 : 382.0) Encodes a leucine-rich repeat... 0.02 Orthogroups_2024-Update
PSME_00055353-RA No alias (at3g47110 : 635.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
PSME_00055653-RA No alias (at2g24130 : 524.0) Leucine-rich receptor-like protein... 0.06 Orthogroups_2024-Update
PSME_00055726-RA No alias (at3g47090 : 585.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
PSME_00055909-RA No alias (at3g47110 : 624.0) Leucine-rich repeat protein kinase... 0.02 Orthogroups_2024-Update
Potri.011G140900 No alias Leucine-rich repeat protein kinase family protein 0.02 Orthogroups_2024-Update
Seita.1G233400.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.05 Orthogroups_2024-Update
Seita.5G106400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G106500.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.03 Orthogroups_2024-Update
Seita.6G034700.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.01 Orthogroups_2024-Update
Seita.6G067100.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
Seita.7G239900.1 No alias flagellin receptor kinase component of FLS2-BAK1... 0.04 Orthogroups_2024-Update
Seita.8G157000.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.08 Orthogroups_2024-Update
Seita.8G157300.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.J030600.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.01 Orthogroups_2024-Update
Sobic.003G067600.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.02 Orthogroups_2024-Update
Sobic.004G217500.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.03 Orthogroups_2024-Update
Sobic.005G131600.2 No alias EC_2.7 transferase transferring phosphorus-containing group 0.02 Orthogroups_2024-Update
Sobic.005G187700.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.03 Orthogroups_2024-Update
Sobic.006G030400.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.02 Orthogroups_2024-Update
Sobic.010G174600.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc08g075600 No alias Non-specific serine/threonine protein kinase (AHRD V3.3... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006468 protein phosphorylation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0008156 negative regulation of DNA replication IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0048478 replication fork protection IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051053 negative regulation of DNA metabolic process IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Predicted GO
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000719 Prot_kinase_dom 421 627
IPR001611 Leu-rich_rpt 159 181
No external refs found!