PSME_00042944-RA

Description : (at5g26170 : 128.0) member of WRKY Transcription Factor; Group II-c; WRKY DNA-binding protein 50 (WRKY50); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 51 (TAIR:AT5G64810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)

Gene families : OG_42_0000005 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00042944-RA
Cluster	HCCA clusters: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
A4A49_10325	No alias	putative wrky transcription factor 40	0.02	Orthogroups_2024-Update
Bradi2g18530	No alias	WRKY DNA-binding protein 51	0.03	Orthogroups_2024-Update
Bradi2g49020	No alias	WRKY DNA-binding protein 24	0.05	Orthogroups_2024-Update
Bradi3g34850	No alias	WRKY family transcription factor	0.04	Orthogroups_2024-Update
Bradi4g01950	No alias	WRKY DNA-binding protein 33	0.02	Orthogroups_2024-Update
Bradi4g19060	No alias	WRKY DNA-binding protein 75	0.02	Orthogroups_2024-Update
Bradi4g30360	No alias	WRKY DNA-binding protein 40	0.04	Orthogroups_2024-Update
Bradi4g44342	No alias	WRKY DNA-binding protein 70	0.02	Orthogroups_2024-Update
Brara.A01386.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D01806.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D02837.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E00945.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H02398.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I02671.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G040298	No alias	WRKY DNA-binding protein 69	0.02	Orthogroups_2024-Update
GRMZM2G083350	No alias	WRKY DNA-binding protein 72	0.06	Orthogroups_2024-Update
Glyma.01G224800	No alias	WRKY family transcription factor	0.04	Orthogroups_2024-Update
Glyma.02G010900	No alias	WRKY DNA-binding protein 23	0.05	Orthogroups_2024-Update
Glyma.05G184500	No alias	WRKY DNA-binding protein 51	0.03	Orthogroups_2024-Update
Glyma.10G011300	No alias	WRKY DNA-binding protein 23	0.05	Orthogroups_2024-Update
Glyma.10G138300	No alias	WRKY family transcription factor	0.04	Orthogroups_2024-Update
Glyma.19G217800	No alias	WRKY DNA-binding protein 23	0.03	Orthogroups_2024-Update
HORVU6Hr1G013890.3	No alias	WRKY-type transcription factor	0.05	Orthogroups_2024-Update
HORVU6Hr1G028790.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os01g40260	No alias	WRKY77, expressed	0.02	Orthogroups_2024-Update
MA_10436051g0010	No alias	(at1g62300 : 161.0) Encodes a transcription factor...	0.02	Orthogroups_2024-Update
MA_6177g0010	No alias	(at4g11070 : 114.0) member of WRKY Transcription Factor;...	0.06	Orthogroups_2024-Update
PSME_00018337-RA	No alias	(at5g15130 : 183.0) member of WRKY Transcription Factor;...	0.02	Orthogroups_2024-Update
PSME_00032293-RA	No alias	(at4g01720 : 163.0) member of WRKY Transcription Factor;...	0.04	Orthogroups_2024-Update
PSME_00041689-RA	No alias	(at1g29860 : 111.0) member of WRKY Transcription Factor;...	0.06	Orthogroups_2024-Update
PSME_00052260-RA	No alias	(at5g26170 : 117.0) member of WRKY Transcription Factor;...	0.07	Orthogroups_2024-Update
Potri.001G460600	No alias	WRKY DNA-binding protein 14	0.02	Orthogroups_2024-Update
Potri.002G186600	No alias	WRKY family transcription factor	0.03	Orthogroups_2024-Update
Potri.005G086400	No alias	WRKY DNA-binding protein 13	0.02	Orthogroups_2024-Update
Pp1s11_241V6	No alias	wrky transcription	0.04	Orthogroups_2024-Update
Pp1s166_34V6	No alias	wrky transcription	0.05	Orthogroups_2024-Update
Pp1s35_401V6	No alias	wrky transcription	0.02	Orthogroups_2024-Update
Seita.4G033900.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Seita.5G132800.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Seita.5G306000.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Seita.7G302000.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Seita.8G012800.1	No alias	WRKY-type transcription factor	0.04	Orthogroups_2024-Update
Sobic.001G083000.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.002G174200.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.003G248400.1	No alias	WRKY-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.009G238200.1	No alias	WRKY-type transcription factor	0.03	Orthogroups_2024-Update
Solyc08g067340	No alias	WRKY transcription factor 46	0.02	Orthogroups_2024-Update
Sopen05g007580	No alias	WRKY DNA -binding domain	0.03	Orthogroups_2024-Update
Sopen07g029640	No alias	WRKY DNA -binding domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	151	208

External Links

No external refs found!

PSME_00042944-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation