1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00042950-RA

PSME_00042950-RA


Description : (at4g27280 : 94.0) Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: pinoid-binding protein 1 (TAIR:AT5G54490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description)


Gene families : OG_42_0000762 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00042950-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_36651 No alias calcium-binding protein kic 0.03 Orthogroups_2024-Update
Glyma.12G145900 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 47 98
No external refs found!