PSME_00042999-RA

Description : no hits & (original description: no original description)

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00042999-RA
Cluster	HCCA clusters: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
A4A49_16645	No alias	agamous-like mads-box protein agl11	0.02	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.02	Orthogroups_2024-Update
At1g22130	No alias	Agamous-like MADS-box protein AGL104...	0.03	Orthogroups_2024-Update
At2g42830	No alias	K-box region and MADS-box transcription factor family...	0.03	Orthogroups_2024-Update
At4g09960	No alias	K-box region and MADS-box transcription factor family...	0.03	Orthogroups_2024-Update
Brara.A01539.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
Glyma.02G179300	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.09G283800	No alias	K-box region and MADS-box transcription factor family protein	0.04	Orthogroups_2024-Update
Glyma.10G084700	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.10G084800	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.10G085600	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.10G085900	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.13G034100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.16G200700	No alias	AGAMOUS-like 6	0.04	Orthogroups_2024-Update
Glyma.18G105800	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
HORVU7Hr1G025700.6	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
LOC_Os01g69850	No alias	OsMADS65 - MADS-box family gene with MIKC* type-box, expressed	0.03	Orthogroups_2024-Update
Potri.001G112400	No alias	AGAMOUS-like 19	0.02	Orthogroups_2024-Update
Potri.005G182200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.009G055700	No alias	AGAMOUS-like 15	0.03	Orthogroups_2024-Update
Potri.010G154100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Seita.5G432700.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.003G027000.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Solyc06g035570	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g038810	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update
Sopen06g023350	No alias	K-box region	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	17	87

External Links

No external refs found!

PSME_00042999-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation