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  5. PSME_00043046-RA

PSME_00043046-RA


Description : (at1g68920 : 122.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description)


Gene families : OG_42_0000125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043046-RA
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Brara.A00369.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
Glyma.02G174800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G031800 No alias BIG PETAL P 0.03 Orthogroups_2024-Update
LOC_Os04g28280 No alias BEE 3, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00019655-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Potri.014G148900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G105000.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!