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  5. PSME_00043149-RA

PSME_00043149-RA


Description : (at1g07900 : 141.0) LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 282.0) & (original description: no original description)


Gene families : OG_42_0000073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043149-RA
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
At2g40470 No alias LOB domain-containing protein 15... 0.03 Orthogroups_2024-Update
At3g27650 No alias LOB domain-containing protein 25... 0.03 Orthogroups_2024-Update
At5g15060 No alias LOB domain-containing protein 34... 0.03 Orthogroups_2024-Update
Brara.C02074.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.C02407.1 No alias AS2/LOB-type transcription factor 0.04 Orthogroups_2024-Update
Brara.E01292.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Brara.F02209.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G01383.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I00725.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G079185 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Glyma.02G234600 No alias LOB domain-containing protein 13 0.04 Orthogroups_2024-Update
Glyma.04G106400 No alias ASYMMETRIC LEAVES 2-like 1 0.04 Orthogroups_2024-Update
Glyma.05G040500 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Glyma.15G045200 No alias LOB domain-containing protein 11 0.02 Orthogroups_2024-Update
Glyma.15G127900 No alias LOB domain-containing protein 4 0.03 Orthogroups_2024-Update
Glyma.17G086300 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Orthogroups_2024-Update
MA_113501g0010 No alias (at2g30130 : 200.0) Overexpression/activation tagged... 0.03 Orthogroups_2024-Update
MA_161608g0010 No alias (at5g63090 : 189.0) Involved in lateral organ... 0.05 Orthogroups_2024-Update
MA_16891g0010 No alias (at5g63090 : 175.0) Involved in lateral organ... 0.05 Orthogroups_2024-Update
MA_85817g0010 No alias (at1g07900 : 152.0) LOB domain-containing protein 1... 0.08 Orthogroups_2024-Update
MA_902082g0010 No alias (at1g07900 : 123.0) LOB domain-containing protein 1... 0.04 Orthogroups_2024-Update
Mp5g11460.1 No alias transcription factor (AS2/LOB) 0.04 Orthogroups_2024-Update
PSME_00009389-RA No alias (at2g28500 : 147.0) LOB domain-containing protein 11... 0.07 Orthogroups_2024-Update
PSME_00022332-RA No alias (at2g40470 : 197.0) LOB domain-containing protein 15... 0.1 Orthogroups_2024-Update
PSME_00046046-RA No alias (at1g07900 : 117.0) LOB domain-containing protein 1... 0.04 Orthogroups_2024-Update
PSME_00048913-RA No alias (at2g28500 : 129.0) LOB domain-containing protein 11... 0.08 Orthogroups_2024-Update
PSME_00050292-RA No alias (at2g40470 : 177.0) LOB domain-containing protein 15... 0.04 Orthogroups_2024-Update
PSME_00056008-RA No alias (at2g30130 : 185.0) Overexpression/activation tagged... 0.06 Orthogroups_2024-Update
Potri.003G039700 No alias LOB domain-containing protein 22 0.03 Orthogroups_2024-Update
Pp1s73_7V6 No alias lob domain-containing 0.04 Orthogroups_2024-Update
Seita.9G443300.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G409200.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.008G190800.1 No alias AS2/LOB-type transcription factor 0.02 Orthogroups_2024-Update
Solyc02g090410 No alias ASYMMETRIC LEAVES 2-like 1 (AHRD V3.3 *** A0A061DMY0_THECC) 0.03 Orthogroups_2024-Update
Solyc11g045530 No alias LOB domain-containing protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen02g016910 No alias Protein of unknown function DUF260 0.02 Orthogroups_2024-Update
Sopen03g031510 No alias Protein of unknown function DUF260 0.03 Orthogroups_2024-Update
Sopen11g004610 No alias Protein of unknown function DUF260 0.03 Orthogroups_2024-Update
Sopen11g030110 No alias Protein of unknown function DUF260 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 33 125
No external refs found!