1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00043197-RA

PSME_00043197-RA


Description : (at2g43130 : 275.0) encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic.; ARA4; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: response to heat, inter-Golgi cisterna vesicle-mediated transport; LOCATED IN: trans-Golgi network, Golgi stack, plasma membrane, Golgi-associated vesicle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Rab11-related (InterPro:IPR015595), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 26465 Blast hits to 26427 proteins in 733 species: Archae - 21; Bacteria - 130; Metazoa - 13921; Fungi - 3601; Plants - 3013; Viruses - 20; Other Eukaryotes - 5759 (source: NCBI BLink). & (q40191|rb11a_lotja : 244.0) Ras-related protein Rab11A - Lotus japonicus & (reliability: 550.0) & (original description: no original description)


Gene families : OG_42_0001437 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001437_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043197-RA
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
230012 No alias RAB GTPase homolog A5E 0.03 Orthogroups_2024-Update
LOC_Os07g44040 No alias ras-related protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.014G150300 No alias RAB GTPase homolog A5D 0.04 Orthogroups_2024-Update
Pp1s348_29V6 No alias ras superfamily gtp-binding protein 0.03 Orthogroups_2024-Update
Sopen09g035840 No alias Ras family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
MF GO:0005525 GTP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 15 175
No external refs found!