- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at2g30280 : 116.0) Encodes RDM4, a transcriptional regulator functioning in RNA-directed DNA methylation and plant development.; RNA-directed DNA methylation 4 (RDM4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1762 (InterPro:IPR013883); Has 44351 Blast hits to 18281 proteins in 1030 species: Archae - 135; Bacteria - 13377; Metazoa - 12547; Fungi - 4712; Plants - 1881; Viruses - 609; Other Eukaryotes - 11090 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description)
Gene families : OG_42_0007638 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007638_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00043470-RA | |
| Cluster | HCCA clusters: Cluster_683 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003909 | DNA ligase activity | IEP | Predicted GO |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Predicted GO |
| MF | GO:0004180 | carboxypeptidase activity | IEP | Predicted GO |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Predicted GO |
| BP | GO:0019725 | cellular homeostasis | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| BP | GO:0042592 | homeostatic process | IEP | Predicted GO |
| BP | GO:0045454 | cell redox homeostasis | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| BP | GO:0065007 | biological regulation | IEP | Predicted GO |
| BP | GO:0065008 | regulation of biological quality | IEP | Predicted GO |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013883 | TF_Iwr1 | 101 | 164 |
| No external refs found! |