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  5. PSME_00043495-RA

PSME_00043495-RA


Description : (at3g11980 : 197.0) Similar to fatty acid reductases.; MALE STERILITY 2 (MS2); FUNCTIONS IN: fatty-acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 6 (TAIR:AT3G56700.1); Has 2390 Blast hits to 2358 proteins in 427 species: Archae - 4; Bacteria - 606; Metazoa - 985; Fungi - 290; Plants - 282; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description)


Gene families : OG_42_0000301 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043495-RA
Cluster HCCA clusters: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g28570 No alias fatty acyl coA reductase, putative, expressed 0.03 Orthogroups_2024-Update
Seita.6G243900.1 No alias fatty acyl CoA reductase *(FAR) 0.02 Orthogroups_2024-Update
Seita.6G244000.1 No alias fatty acyl CoA reductase *(FAR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR033640 FAR_C 189 236
IPR013120 Male_sterile_NAD-bd 13 103
No external refs found!