1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00043641-RA

PSME_00043641-RA


Description : (at1g71400 : 226.0) Encodes a CLAVATA2 (CLV2)-related gene. Complements the clv2 mutant when expressed under the control of the CLV2 promoter.; receptor like protein 12 (RLP12); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 11 (TAIR:AT1G71390.1); Has 137756 Blast hits to 35291 proteins in 1265 species: Archae - 48; Bacteria - 8234; Metazoa - 34067; Fungi - 1669; Plants - 82756; Viruses - 14; Other Eukaryotes - 10968 (source: NCBI BLink). & (p93194|rpk1_iponi : 172.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 434.0) & (original description: no original description)


Gene families : OG_42_0001593 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001593_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043641-RA

Target Alias Description ECC score Gene Family Method Actions
Glyma.16G183400 No alias disease resistance family protein / LRR family protein 0.09 Orthogroups_2024-Update
Glyma.16G191732 No alias receptor like protein 15 0.01 Orthogroups_2024-Update
Glyma.16G193532 No alias receptor like protein 14 0.03 Orthogroups_2024-Update
MA_10018938g0010 No alias (at3g25010 : 91.3) receptor like protein 41 (RLP41);... 0.02 Orthogroups_2024-Update
MA_10436796g0010 No alias (at2g33050 : 189.0) receptor like protein 26 (RLP26);... 0.04 Orthogroups_2024-Update
PSME_00020023-RA No alias (at5g63930 : 219.0) Leucine-rich repeat protein kinase... 0.02 Orthogroups_2024-Update
PSME_00023236-RA No alias (at4g20140 : 158.0) Encodes GASSHO1 (GSO1), a putative... 0.03 Orthogroups_2024-Update
PSME_00029041-RA No alias (at4g20270 : 213.0) Encodes a CLAVATA1-related receptor... 0.03 Orthogroups_2024-Update
PSME_00046843-RA No alias (at1g35710 : 215.0) Protein kinase family protein with... 0.04 Orthogroups_2024-Update
PSME_00047942-RA No alias (at1g08590 : 138.0) similar to CLV1-like leucine rich... 0.02 Orthogroups_2024-Update
PSME_00050965-RA No alias (at2g34930 : 157.0) disease resistance family protein /... 0.06 Orthogroups_2024-Update
PSME_00055220-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 276 335
IPR001611 Leu-rich_rpt 573 609
IPR001611 Leu-rich_rpt 155 214
IPR001611 Leu-rich_rpt 98 120
IPR001611 Leu-rich_rpt 462 484
IPR001611 Leu-rich_rpt 411 427
IPR001611 Leu-rich_rpt 252 266
No external refs found!