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  5. PSME_00043647-RA

PSME_00043647-RA


Description : (at3g24120 : 209.0) Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G13640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description)


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043647-RA
Cluster HCCA clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
A4A49_09886 No alias putative transcription factor kan2 0.04 Orthogroups_2024-Update
A4A49_31971 No alias myb family transcription factor phl11 0.03 Orthogroups_2024-Update
At5g16560 No alias Transcription repressor KAN1... 0.03 Orthogroups_2024-Update
Bradi1g32370 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g29700 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G069525 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G035700 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G146600 No alias myb-like HTH transcriptional regulator family protein 0.02 Orthogroups_2024-Update
LOC_Os05g41240 No alias Myb-like DNA-binding domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os08g33750 No alias myb-like DNA-binding domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_100658g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10432937g0010 No alias (at5g16560 : 130.0) Encodes a KANADI protein (KAN) that... 0.03 Orthogroups_2024-Update
Mp3g04970.1 No alias G2-like GARP transcription factor 0.02 Orthogroups_2024-Update
PSME_00007589-RA No alias (at2g40260 : 115.0) Homeodomain-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00007590-RA No alias (at2g38300 : 112.0) myb-like HTH transcriptional... 0.03 Orthogroups_2024-Update
Potri.004G082400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G060200 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G054800 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.6G120200.1 No alias GARP subgroup PHL transcription factor 0.02 Orthogroups_2024-Update
Seita.9G078300.1 No alias KANADI-type transcription factor 0.04 Orthogroups_2024-Update
Solyc11g011770 No alias Myb family transcription factor-like protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc12g006280 No alias Homeodomain-like superfamily protein (AHRD V3.3 *-* AT2G40260.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 54 104
IPR025756 Myb_CC_LHEQLE 147 194
No external refs found!