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  5. PSME_00043728-RA

PSME_00043728-RA


Description : (at1g55040 : 267.0) zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: nucleus; EXPRESSED IN: cultured cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.1); Has 22562 Blast hits to 12307 proteins in 1055 species: Archae - 52; Bacteria - 6108; Metazoa - 7873; Fungi - 2055; Plants - 2458; Viruses - 215; Other Eukaryotes - 3801 (source: NCBI BLink). & (reliability: 534.0) & (original description: no original description)


Gene families : OG_42_0001998 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043728-RA
Cluster HCCA clusters: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
Potri.010G107400 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G046500 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046039 GTP metabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 258 284
IPR001876 Znf_RanBP2 321 343
No external refs found!