1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00043760-RA

PSME_00043760-RA


Description : (at5g23850 : 425.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G48980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 850.0) & (original description: no original description)


Gene families : OG_42_0000511 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043760-RA
Cluster HCCA clusters: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
A4A49_33305 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Brara.G01914.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre12.g531750 No alias Arabidopsis thaliana protein of unknown function (DUF821) 0.01 Orthogroups_2024-Update
Glyma.03G013800 No alias downstream target of AGL15 2 0.02 Orthogroups_2024-Update
Glyma.07G073400 No alias downstream target of AGL15 2 0.03 Orthogroups_2024-Update
Glyma.09G261300 No alias Arabidopsis thaliana protein of unknown function (DUF821) 0.03 Orthogroups_2024-Update
Glyma.16G191600 No alias Arabidopsis thaliana protein of unknown function (DUF821) 0.02 Orthogroups_2024-Update
HORVU0Hr1G021480.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00954_0020 kfl00954_0020_v1.1 (at1g07220 : 241.0) FUNCTIONS IN: molecular_function... 0.02 Orthogroups_2024-Update
MA_116478g0010 No alias (at5g23850 : 472.0) FUNCTIONS IN: molecular_function... 0.03 Orthogroups_2024-Update
Potri.002G157900 No alias Arabidopsis thaliana protein of unknown function (DUF821) 0.02 Orthogroups_2024-Update
Sobic.007G001100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G042300.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006598 LipoPS_modifying 99 488
No external refs found!