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  5. PSME_00043863-RA

PSME_00043863-RA


Description : (at5g03760 : 440.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 880.0) & (original description: no original description)


Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043863-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Brara.C00129.1 No alias EC_2.4 glycosyltransferase 0.02 Orthogroups_2024-Update
Brara.G00952.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.02 Orthogroups_2024-Update
Brara.J02800.1 No alias EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Glyma.12G084600 No alias cellulose synthase-like A02 0.02 Orthogroups_2024-Update
LOC_Os05g43530 No alias CSLC7 - cellulose synthase-like family C, expressed 0.03 Orthogroups_2024-Update
MA_10429365g0010 No alias (at4g31590 : 729.0) encodes a gene similar to cellulose... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR001173 Glyco_trans_2-like 155 271
No external refs found!