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  5. PSME_00043955-RA

PSME_00043955-RA


Description : (at2g13600 : 417.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 93.6) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 834.0) & (original description: no original description)


Gene families : OG_42_0018852 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043955-RA
Cluster HCCA clusters: Cluster_225


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 183
IPR002885 Pentatricopeptide_repeat 5 52
IPR002885 Pentatricopeptide_repeat 238 285
IPR002885 Pentatricopeptide_repeat 104 133
IPR002885 Pentatricopeptide_repeat 313 336
IPR002885 Pentatricopeptide_repeat 80 100
No external refs found!