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  5. PSME_00043961-RA

PSME_00043961-RA


Description : (at2g01080 : 171.0) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)


Gene families : OG_42_0006004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00043961-RA
Cluster HCCA clusters: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
A4A49_40858 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sobic.001G429000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g104580 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.02 Orthogroups_2024-Update
Sopen01g047090 No alias Late embryogenesis abundant protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR004864 LEA_2 100 199
No external refs found!