PSME_00043995-RA

Description : (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 25 (TAIR:AT3G19380.1); Has 2464 Blast hits to 2403 proteins in 144 species: Archae - 0; Bacteria - 20; Metazoa - 134; Fungi - 16; Plants - 2081; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink). & (q64ha9|spl11_orysa : 154.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 454.0) & (original description: no original description)

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00043995-RA
Cluster	HCCA clusters: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
416356	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
426053	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
A4A49_22370	No alias	u-box domain-containing protein 26	0.07	Orthogroups_2024-Update
A4A49_33780	No alias	e3 ubiquitin-protein ligase pub23	0.08	Orthogroups_2024-Update
A4A49_38562	No alias	u-box domain-containing protein 27	0.02	Orthogroups_2024-Update
At1g49780	No alias	U-box domain-containing protein 26...	0.03	Orthogroups_2024-Update
At1g66160	No alias	U-box domain-containing protein 20...	0.04	Orthogroups_2024-Update
Bradi3g45250	No alias	CYS, MET, PRO, and GLY protein 2	0.03	Orthogroups_2024-Update
Bradi3g45380	No alias	plant U-box 25	0.02	Orthogroups_2024-Update
Bradi5g27660	No alias	CYS, MET, PRO, and GLY protein 2	0.02	Orthogroups_2024-Update
Brara.D00589.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Brara.E02265.1	No alias	U-Box-group-III E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Brara.E03555.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
GRMZM2G055052	No alias	CYS, MET, PRO, and GLY protein 1	0.03	Orthogroups_2024-Update
GRMZM2G071484	No alias	plant U-box 22	0.04	Orthogroups_2024-Update
GRMZM2G151204	No alias	CYS, MET, PRO, and GLY protein 1	0.04	Orthogroups_2024-Update
Glyma.02G102900	No alias	plant U-box 26	0.04	Orthogroups_2024-Update
Glyma.02G196301	No alias	plant U-box 24	0.03	Orthogroups_2024-Update
Glyma.02G242900	No alias	CYS, MET, PRO, and GLY protein 1	0.03	Orthogroups_2024-Update
Glyma.03G202600	No alias	plant U-box 22	0.06	Orthogroups_2024-Update
Glyma.05G192100	No alias	plant U-box 25	0.03	Orthogroups_2024-Update
Glyma.07G106000	No alias	ARM repeat superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G147200	No alias	CYS, MET, PRO, and GLY protein 2	0.03	Orthogroups_2024-Update
Glyma.09G172100	No alias	CYS, MET, PRO, and GLY protein 1	0.03	Orthogroups_2024-Update
Glyma.10G262600	No alias	plant U-box 22	0.04	Orthogroups_2024-Update
HORVU2Hr1G076470.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
HORVU4Hr1G064070.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
HORVU6Hr1G077120.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
HORVU6Hr1G089560.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Kfl00376_0010	kfl00376_0010_v1....	(at2g28830 : 87.8) PLANT U-BOX 12 (PUB12); FUNCTIONS IN:...	0.02	Orthogroups_2024-Update
LOC_Os01g64570	No alias	U-box domain-containing protein, putative, expressed	0.06	Orthogroups_2024-Update
LOC_Os02g33590	No alias	U-box domain-containing protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os02g34410	No alias	U-box domain-containing protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os02g46500	No alias	U-box, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g13740	No alias	immediate-early fungal elicitor protein CMPG1, putative,...	0.03	Orthogroups_2024-Update
LOC_Os04g35680	No alias	U-box domain containing protein, expressed	0.04	Orthogroups_2024-Update
LOC_Os06g30330	No alias	U-box domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g06670	No alias	U-box protein, putative, expressed	0.03	Orthogroups_2024-Update
MA_10432179g0010	No alias	(at3g52450 : 121.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
MA_311559g0010	No alias	(at3g52450 : 124.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
MA_33190g0010	No alias	(at2g35930 : 324.0) Encodes a cytoplasmically localized...	0.04	Orthogroups_2024-Update
MA_415393g0010	No alias	(at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS...	0.04	Orthogroups_2024-Update
MA_6335g0010	No alias	"(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein...	0.06	Orthogroups_2024-Update
MA_684442g0010	No alias	(at3g52450 : 140.0) Encodes a cytoplasmically localized...	0.02	Orthogroups_2024-Update
Mp3g11730.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Orthogroups_2024-Update
Mp7g11000.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Orthogroups_2024-Update
PSME_00022617-RA	No alias	(at3g52450 : 247.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
PSME_00026834-RA	No alias	(at3g19380 : 258.0) plant U-box 25 (PUB25); FUNCTIONS...	0.06	Orthogroups_2024-Update
PSME_00048709-RA	No alias	(at2g35930 : 183.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
PSME_00049378-RA	No alias	(at3g19380 : 185.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00054803-RA	No alias	(at3g52450 : 283.0) Encodes a cytoplasmically localized...	0.06	Orthogroups_2024-Update
PSME_00056761-RA	No alias	(at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS...	0.05	Orthogroups_2024-Update
Potri.002G070500	No alias	plant U-box 29	0.05	Orthogroups_2024-Update
Potri.005G189800	No alias	plant U-box 29	0.03	Orthogroups_2024-Update
Potri.006G202700	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
Potri.007G110600	No alias	ARM repeat superfamily protein	0.06	Orthogroups_2024-Update
Potri.009G016100	No alias	plant U-box 24	0.07	Orthogroups_2024-Update
Potri.009G016200	No alias	plant U-box 23	0.03	Orthogroups_2024-Update
Potri.016G069400	No alias	plant U-box 22	0.04	Orthogroups_2024-Update
Potri.016G069500	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
Potri.017G135000	No alias	ARM repeat superfamily protein	0.05	Orthogroups_2024-Update
Seita.1G186200.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Seita.7G095100.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Seita.7G104100.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Seita.9G474100.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Sobic.001G441100.1	No alias	E3 ubiquitin ligase	0.05	Orthogroups_2024-Update
Sobic.003G367000.1	No alias	E3 ubiquitin ligase	0.05	Orthogroups_2024-Update
Sobic.004G169200.1	No alias	E3 ubiquitin ligase	0.07	Orthogroups_2024-Update
Sobic.004G169900.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Sobic.004G245100.1	No alias	E3 ubiquitin ligase	0.05	Orthogroups_2024-Update
Sobic.006G075400.2	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.010G102000.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Solyc01g005160	No alias	Avr9/Cf-9 rapidly elicited protein 1	0.02	Orthogroups_2024-Update
Solyc01g009330	No alias	U-box domain-containing family protein (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc01g080920	No alias	LOW QUALITY:U-box domain-containing protein (AHRD V3.3...	0.04	Orthogroups_2024-Update
Solyc04g008100	No alias	U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI)	0.02	Orthogroups_2024-Update
Solyc06g074140	No alias	LOW QUALITY:U-box domain-containing family protein (AHRD...	0.03	Orthogroups_2024-Update
Solyc11g068940	No alias	U-box domain-containing family protein (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004096	catalase activity	IEP	Predicted GO
MF	GO:0004568	chitinase activity	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
BP	GO:0006022	aminoglycan metabolic process	IEP	Predicted GO
BP	GO:0006026	aminoglycan catabolic process	IEP	Predicted GO
BP	GO:0006030	chitin metabolic process	IEP	Predicted GO
BP	GO:0006032	chitin catabolic process	IEP	Predicted GO
BP	GO:0006040	amino sugar metabolic process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0008037	cell recognition	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Predicted GO
BP	GO:0022414	reproductive process	IEP	Predicted GO
BP	GO:0042737	drug catabolic process	IEP	Predicted GO
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predicted GO
BP	GO:0046348	amino sugar catabolic process	IEP	Predicted GO
BP	GO:0048544	recognition of pollen	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	18	88
IPR000225	Armadillo	275	311

External Links

No external refs found!

PSME_00043995-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation