1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00044068-RA

PSME_00044068-RA


Description : (at1g67480 : 140.0) Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G27420.1); Has 11510 Blast hits to 6062 proteins in 581 species: Archae - 21; Bacteria - 896; Metazoa - 8265; Fungi - 112; Plants - 1475; Viruses - 165; Other Eukaryotes - 576 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)


Gene families : OG_42_0002284 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002284_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044068-RA
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
MA_137994g0010 No alias (at1g67480 : 402.0) Galactose oxidase/kelch repeat... 0.02 Orthogroups_2024-Update
Seita.7G067800.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
InterPro domains Description Start Stop
IPR006652 Kelch_1 78 111
No external refs found!