Sopen06g011320

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g011320
Cluster	HCCA clusters: Cluster_188

Target	Alias	Description	ECC score	Gene Family Method
A4A49_06501	No alias	retrovirus-related pol polyprotein from transposon tnt 1-94	0.02	Orthogroups_2024-Update
A4A49_29852	No alias	abc transporter c family member 2	0.03	Orthogroups_2024-Update
Cre03.g183950	No alias	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	0.02	Orthogroups_2024-Update
HORVU5Hr1G106200.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os02g15400	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
LOC_Os04g49790	No alias	retrotransposon protein, putative, Ty1-copia subclass, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g36940	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g40640	No alias	retrotransposon protein, putative, Ty1-copia subclass, expressed	0.02	Orthogroups_2024-Update
Solyc03g043680	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc04g011970	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc05g050260	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc06g011420	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc09g015410	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc09g030500	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc11g039940	No alias	No description available	0.04	Orthogroups_2024-Update
Sopen01g005810	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen01g006590	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen01g017560	No alias	gag-polypeptide of LTR copia-type	0.07	Orthogroups_2024-Update
Sopen01g021460	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen01g027300	No alias	Integrase core domain	0.05	Orthogroups_2024-Update
Sopen02g005350	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen02g015660	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen02g020410	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen03g028500	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen04g006060	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen04g009050	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen04g023600	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen04g031270	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen05g009400	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen05g013410	No alias	Integrase core domain	0.04	Orthogroups_2024-Update
Sopen05g022390	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g016250	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g024630	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen07g005860	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen07g014860	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen07g016720	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.05	Orthogroups_2024-Update
Sopen07g023540	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen08g006540	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen08g008510	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.05	Orthogroups_2024-Update
Sopen09g017310	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen09g024610	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen10g007390	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen10g019840	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen10g021210	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g012660	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen11g013320	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g014800	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen11g022120	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen12g018680	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	495	559
IPR013103	RVT_2	936	1179
IPR001584	Integrase_cat-core	576	688
IPR002487	TF_Kbox	31	89
IPR001878	Znf_CCHC	324	341

External Links

No external refs found!

Sopen06g011320

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation