Description : (at4g16730 : 128.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (p93665|dcs1_goshi : 115.0) (+)-delta-cadinene synthase (EC 4.2.3.13) (D-cadinene synthase) - Gossypium hirsutum (Upland cotton) & (reliability: 256.0) & (original description: no original description)
Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00044370-RA | |
Cluster | HCCA clusters: Cluster_6 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_23873 | No alias | (-)-camphenetricyclene synthase, chloroplastic | 0.02 | Orthogroups_2024-Update | |
At3g25830 | No alias | 1,8-cineole synthase 2, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
At4g16730 | No alias | terpene synthase 02 [Source:TAIR;Acc:AT4G16730] | 0.03 | Orthogroups_2024-Update | |
Brara.C02651.1 | No alias | EC_4.2 carbon-oxygen lyase &... | 0.03 | Orthogroups_2024-Update | |
Brara.H00876.1 | No alias | EC_4.2 carbon-oxygen lyase &... | 0.03 | Orthogroups_2024-Update | |
Glyma.12G197500 | No alias | terpene synthase 02 | 0.04 | Orthogroups_2024-Update | |
Glyma.13G321100 | No alias | terpene synthase 03 | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G111960.3 | No alias | EC_4.2 carbon-oxygen lyase &... | 0.03 | Orthogroups_2024-Update | |
MA_10426551g0010 | No alias | (p59287|cass_ricco : 248.0) Casbene synthase,... | 0.06 | Orthogroups_2024-Update | |
MA_10435706g0010 | No alias | (p93665|dcs1_goshi : 286.0) (+)-delta-cadinene synthase... | 0.03 | Orthogroups_2024-Update | |
MA_10435955g0010 | No alias | (o04408|ksa_pea : 162.0) Ent-kaurene synthase A,... | 0.09 | Orthogroups_2024-Update | |
MA_10436878g0010 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
MA_111325g0010 | No alias | no hits & (original description: no original description) | 0.04 | Orthogroups_2024-Update | |
MA_17608g0020 | No alias | (at4g16740 : 180.0) Encodes an (E,E)-alpha-farnesene... | 0.03 | Orthogroups_2024-Update | |
MA_491032g0010 | No alias | (at4g02780 : 134.0) Catalyzes the conversion of... | 0.04 | Orthogroups_2024-Update | |
MA_70145g0010 | No alias | (at4g16740 : 253.0) Encodes an (E,E)-alpha-farnesene... | 0.04 | Orthogroups_2024-Update | |
MA_823966g0010 | No alias | (at2g24210 : 162.0) terpene synthase 10 (TPS10);... | 0.03 | Orthogroups_2024-Update | |
MA_9401581g0010 | No alias | (o04408|ksa_pea : 146.0) Ent-kaurene synthase A,... | 0.09 | Orthogroups_2024-Update | |
PSME_00003113-RA | No alias | (at3g25810 : 250.0) Terpenoid cyclases/Protein... | 0.05 | Orthogroups_2024-Update | |
PSME_00003264-RA | No alias | (at4g02780 : 395.0) Catalyzes the conversion of... | 0.07 | Orthogroups_2024-Update | |
PSME_00003265-RA | No alias | (at4g02780 : 372.0) Catalyzes the conversion of... | 0.09 | Orthogroups_2024-Update | |
PSME_00003483-RA | No alias | (p93665|dcs1_goshi : 253.0) (+)-delta-cadinene synthase... | 0.05 | Orthogroups_2024-Update | |
PSME_00008408-RA | No alias | (at4g02780 : 401.0) Catalyzes the conversion of... | 0.05 | Orthogroups_2024-Update | |
PSME_00030201-RA | No alias | (at4g02780 : 365.0) Catalyzes the conversion of... | 0.04 | Orthogroups_2024-Update | |
PSME_00035829-RA | No alias | (q40577|5eas_tobac : 197.0) Aristolochene synthase (EC... | 0.05 | Orthogroups_2024-Update | |
PSME_00037858-RA | No alias | (at4g16740 : 161.0) Encodes an (E,E)-alpha-farnesene... | 0.05 | Orthogroups_2024-Update | |
Potri.001G308300 | No alias | terpene synthase-like sequence-1,8-cineole | 0.02 | Orthogroups_2024-Update | |
Potri.011G031800 | No alias | terpene synthase-like sequence-1,8-cineole | 0.06 | Orthogroups_2024-Update | |
Potri.T001000 | No alias | terpene synthase-like sequence-1,8-cineole | 0.02 | Orthogroups_2024-Update | |
Solyc01g105900 | No alias | Beta myrcene/limonene synthase (AHRD V3.3 *** G1JUH4_SOLLC) | 0.04 | Orthogroups_2024-Update | |
Solyc01g105960 | No alias | (E)-beta-ocimene synthase | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEA | InterProScan predictions |
MF | GO:0010333 | terpene synthase activity | IEA | InterProScan predictions |
MF | GO:0016829 | lyase activity | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0004420 | hydroxymethylglutaryl-CoA reductase (NADPH) activity | IEP | Predicted GO |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
MF | GO:0004556 | alpha-amylase activity | IEP | Predicted GO |
MF | GO:0004568 | chitinase activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
BP | GO:0006022 | aminoglycan metabolic process | IEP | Predicted GO |
BP | GO:0006026 | aminoglycan catabolic process | IEP | Predicted GO |
BP | GO:0006030 | chitin metabolic process | IEP | Predicted GO |
BP | GO:0006032 | chitin catabolic process | IEP | Predicted GO |
BP | GO:0006040 | amino sugar metabolic process | IEP | Predicted GO |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006629 | lipid metabolic process | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0006952 | defense response | IEP | Predicted GO |
MF | GO:0008061 | chitin binding | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
BP | GO:0009056 | catabolic process | IEP | Predicted GO |
BP | GO:0009057 | macromolecule catabolic process | IEP | Predicted GO |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
MF | GO:0009916 | alternative oxidase activity | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0015936 | coenzyme A metabolic process | IEP | Predicted GO |
MF | GO:0016301 | kinase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
BP | GO:0016567 | protein ubiquitination | IEP | Predicted GO |
MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Predicted GO |
MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Predicted GO |
BP | GO:0017144 | drug metabolic process | IEP | Predicted GO |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predicted GO |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0036211 | protein modification process | IEP | Predicted GO |
BP | GO:0042737 | drug catabolic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044248 | cellular catabolic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0046348 | amino sugar catabolic process | IEP | Predicted GO |
BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0065007 | biological regulation | IEP | Predicted GO |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Predicted GO |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Predicted GO |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
No external refs found! |