PSME_00044411-RA


Description : (at1g69780 : 139.0) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.; ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)


Gene families : OG_42_0000105 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000105_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044411-RA
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Bradi4g35910 No alias homeobox 7 0.02 Orthogroups_2024-Update
Brara.G01475.1 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
HORVU2Hr1G092710.2 No alias HD-ZIP I/II-type transcription factor 0.03 Orthogroups_2024-Update
HORVU4Hr1G075180.3 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
PSME_00014719-RA No alias (at4g40060 : 125.0) Encodes a homeodomain leucine zipper... 0.02 Orthogroups_2024-Update
Sobic.004G251300.1 No alias HD-ZIP I/II-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G300300.1 No alias HD-ZIP I/II-type transcription factor 0.01 Orthogroups_2024-Update
Solyc01g096320 No alias Homeobox-leucine zipper protein (AHRD V3.3 *** M4W1Z7_TOBAC) 0.02 Orthogroups_2024-Update
Solyc09g008810 No alias Homeobox leucine zipper protein (AHRD V3.3 *** A0A072U315_MEDTR) 0.03 Orthogroups_2024-Update
Sopen03g032330 No alias Homeobox domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0043565 sequence-specific DNA binding IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 51 104
IPR003106 Leu_zip_homeo 106 144
No external refs found!