Description : (at5g03760 : 414.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 828.0) & (original description: no original description)
Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00044497-RA | |
Cluster | HCCA clusters: Cluster_285 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At1g23480 | No alias | Glycosyltransferase (Fragment)... | 0.02 | Orthogroups_2024-Update | |
Brara.A00614.1 | No alias | 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase | 0.03 | Orthogroups_2024-Update | |
PSME_00004636-RA | No alias | (at5g03760 : 500.0) encodes a beta-mannan synthase that... | 0.01 | Orthogroups_2024-Update | |
PSME_00010937-RA | No alias | (at4g31590 : 165.0) encodes a gene similar to cellulose... | 0.01 | Orthogroups_2024-Update | |
PSME_00035917-RA | No alias | (at5g03760 : 795.0) encodes a beta-mannan synthase that... | 0.01 | Orthogroups_2024-Update | |
PSME_00039709-RA | No alias | (at5g03760 : 369.0) encodes a beta-mannan synthase that... | 0.01 | Orthogroups_2024-Update | |
Sobic.003G308100.1 | No alias | 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
MF | GO:0004519 | endonuclease activity | IEP | Predicted GO |
MF | GO:0004521 | endoribonuclease activity | IEP | Predicted GO |
MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
MF | GO:0008146 | sulfotransferase activity | IEP | Predicted GO |
MF | GO:0008289 | lipid binding | IEP | Predicted GO |
MF | GO:0016782 | transferase activity, transferring sulfur-containing groups | IEP | Predicted GO |
MF | GO:0016831 | carboxy-lyase activity | IEP | Predicted GO |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0033897 | ribonuclease T2 activity | IEP | Predicted GO |
MF | GO:0042393 | histone binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001173 | Glyco_trans_2-like | 9 | 148 |
No external refs found! |