1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00044600-RA

PSME_00044600-RA


Description : (at5g17540 : 325.0) HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24645|hcbt1_diaca : 179.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 650.0) & (original description: no original description)


Gene families : OG_42_0012129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044600-RA
Cluster HCCA clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
PSME_00030164-RA No alias (at5g17540 : 249.0) HXXXD-type acyl-transferase family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003480 Transferase 46 444
No external refs found!