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  5. PSME_00044607-RA

PSME_00044607-RA


Description : (at3g19430 : 323.0) late embryogenesis abundant protein-related / LEA protein-related; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 407828 Blast hits to 124211 proteins in 3571 species: Archae - 1492; Bacteria - 100012; Metazoa - 145570; Fungi - 58500; Plants - 39690; Viruses - 10531; Other Eukaryotes - 52033 (source: NCBI BLink). & (reliability: 646.0) & (original description: no original description)


Gene families : OG_42_0000359 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044607-RA
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
A4A49_65472 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At1g54890 No alias Late embryogenesis abundant (LEA) protein-like protein... 0.04 Orthogroups_2024-Update
At5g60520 No alias At5g60520 [Source:UniProtKB/TrEMBL;Acc:Q9FKJ5] 0.02 Orthogroups_2024-Update
Brara.A02881.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.11G147600 No alias Late embryogenesis abundant (LEA) protein-related 0.03 Orthogroups_2024-Update
Glyma.12G220200 No alias Late embryogenesis abundant (LEA) protein-related 0.03 Orthogroups_2024-Update
Mp7g08760.1 No alias no hits & (original description: none) 0.03 Orthogroups_2024-Update
PSME_00000795-RA No alias (at5g60530 : 352.0) late embryogenesis abundant... 0.03 Orthogroups_2024-Update
Potri.009G145700 No alias late embryogenesis abundant protein-related / LEA protein-related 0.02 Orthogroups_2024-Update
Pp1s82_76V6 No alias MDK4.20; root cap protein 2-related protein [Arabidopsis... 0.03 Orthogroups_2024-Update
Pp1s82_83V6 No alias No description available 0.04 Orthogroups_2024-Update
Sobic.005G036900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g078930 No alias Late embryogenesis abundant-related protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009646 Root_cap 236 292
No external refs found!