1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00044615-RA

PSME_00044615-RA


Description : (at3g18110 : 1099.0) embryo defective 1270 (EMB1270); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: proton gradient regulation 3 (TAIR:AT4G31850.1); Has 86684 Blast hits to 15673 proteins in 320 species: Archae - 10; Bacteria - 87; Metazoa - 1175; Fungi - 1349; Plants - 81184; Viruses - 0; Other Eukaryotes - 2879 (source: NCBI BLink). & (q76c99|rf1_orysa : 191.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 2198.0) & (original description: no original description)


Gene families : OG_42_0005523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005523_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044615-RA
Cluster HCCA clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
Sobic.010G074100.1 No alias plastidial splicing factor *(EMB1270) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009411 response to UV IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR033443 PPR_long 942 1099
IPR002885 Pentatricopeptide_repeat 780 805
IPR002885 Pentatricopeptide_repeat 398 427
IPR002885 Pentatricopeptide_repeat 815 858
IPR002885 Pentatricopeptide_repeat 431 477
IPR002885 Pentatricopeptide_repeat 254 299
IPR002885 Pentatricopeptide_repeat 870 929
IPR002885 Pentatricopeptide_repeat 314 373
IPR002885 Pentatricopeptide_repeat 488 546
IPR002885 Pentatricopeptide_repeat 559 607
No external refs found!