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  5. PSME_00044709-RA

PSME_00044709-RA


Description : (at5g02860 : 797.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink). & (q76c99|rf1_orysa : 258.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1594.0) & (original description: no original description)


Gene families : OG_42_0002729 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044709-RA
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
Bradi1g22890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G035060.2 No alias stability factor *(PPR10) 0.03 Orthogroups_2024-Update
MA_417755g0010 No alias (at5g02860 : 686.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Potri.001G297300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.009G092100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.002G360200.1 No alias stability factor *(PPR10) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 297 357
IPR002885 Pentatricopeptide_repeat 648 706
IPR002885 Pentatricopeptide_repeat 226 287
IPR002885 Pentatricopeptide_repeat 402 462
IPR002885 Pentatricopeptide_repeat 795 819
IPR002885 Pentatricopeptide_repeat 483 531
IPR002885 Pentatricopeptide_repeat 728 772
IPR002885 Pentatricopeptide_repeat 553 602
No external refs found!