PSME_00044770-RA


Description : (at3g48930 : 222.0) embryo defective 1080 (EMB1080); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1); Has 1290 Blast hits to 1288 proteins in 469 species: Archae - 240; Bacteria - 242; Metazoa - 305; Fungi - 148; Plants - 140; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink). & (p17093|rs11_soybn : 222.0) 40S ribosomal protein S11 - Glycine max (Soybean) & (reliability: 444.0) & (original description: no original description)


Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044770-RA
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
Brara.A02200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Brara.F02607.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Cre12.g514500 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Kfl00435_0080 kfl00435_0080_v1.1 (p17093|rs11_soybn : 243.0) 40S ribosomal protein S11 -... 0.02 Orthogroups_2024-Update
Potri.002G140400 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
Potri.018G115400 No alias ribosomal protein S11-beta 0.02 Orthogroups_2024-Update
Pp1s21_269V6 No alias 40s ribosomal protein s11 0.05 Orthogroups_2024-Update
Pp1s79_58V6 No alias 40s ribosomal protein s11 0.04 Orthogroups_2024-Update
Seita.7G234800.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.004G213200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Solyc06g073790 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.04 Orthogroups_2024-Update
Solyc06g073800 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.02 Orthogroups_2024-Update
Solyc12g042080 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.03 Orthogroups_2024-Update
Sopen06g030190 No alias Ribosomal protein S17 0.03 Orthogroups_2024-Update
Sopen12g021180 No alias Ribosomal protein S17 0.04 Orthogroups_2024-Update
evm.model.contig_3727.5 No alias (at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like... 0.02 Orthogroups_2024-Update
evm.model.tig00000551.22 No alias (p17093|rs11_soybn : 211.0) 40S ribosomal protein S11 -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032440 Ribosomal_S11_N 67 119
IPR000266 Ribosomal_S17/S11 121 189
No external refs found!