Description : (at3g48930 : 222.0) embryo defective 1080 (EMB1080); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: ribosomal protein S11-beta (TAIR:AT5G23740.1); Has 1290 Blast hits to 1288 proteins in 469 species: Archae - 240; Bacteria - 242; Metazoa - 305; Fungi - 148; Plants - 140; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink). & (p17093|rs11_soybn : 222.0) 40S ribosomal protein S11 - Glycine max (Soybean) & (reliability: 444.0) & (original description: no original description)
Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00044770-RA | |
Cluster | HCCA clusters: Cluster_117 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Brara.A02200.1 | No alias | component *(uS17) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
Brara.F02607.1 | No alias | component *(uS17) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
Cre12.g514500 | No alias | Nucleic acid-binding, OB-fold-like protein | 0.03 | Orthogroups_2024-Update | |
Kfl00435_0080 | kfl00435_0080_v1.1 | (p17093|rs11_soybn : 243.0) 40S ribosomal protein S11 -... | 0.02 | Orthogroups_2024-Update | |
Potri.002G140400 | No alias | ribosomal protein S11-beta | 0.03 | Orthogroups_2024-Update | |
Potri.018G115400 | No alias | ribosomal protein S11-beta | 0.02 | Orthogroups_2024-Update | |
Pp1s21_269V6 | No alias | 40s ribosomal protein s11 | 0.05 | Orthogroups_2024-Update | |
Pp1s79_58V6 | No alias | 40s ribosomal protein s11 | 0.04 | Orthogroups_2024-Update | |
Seita.7G234800.1 | No alias | component *(uS17) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
Sobic.004G213200.1 | No alias | component *(uS17) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
Solyc06g073790 | No alias | 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) | 0.04 | Orthogroups_2024-Update | |
Solyc06g073800 | No alias | 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) | 0.02 | Orthogroups_2024-Update | |
Solyc12g042080 | No alias | 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) | 0.03 | Orthogroups_2024-Update | |
Sopen06g030190 | No alias | Ribosomal protein S17 | 0.03 | Orthogroups_2024-Update | |
Sopen12g021180 | No alias | Ribosomal protein S17 | 0.04 | Orthogroups_2024-Update | |
evm.model.contig_3727.5 | No alias | (at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00000551.22 | No alias | (p17093|rs11_soybn : 211.0) 40S ribosomal protein S11 -... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Predicted GO |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
CC | GO:0005740 | mitochondrial envelope | IEP | Predicted GO |
CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Predicted GO |
CC | GO:0016459 | myosin complex | IEP | Predicted GO |
MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Predicted GO |
MF | GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | IEP | Predicted GO |
CC | GO:0031967 | organelle envelope | IEP | Predicted GO |
CC | GO:0031975 | envelope | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
MF | GO:0051287 | NAD binding | IEP | Predicted GO |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
MF | GO:0071949 | FAD binding | IEP | Predicted GO |
No external refs found! |