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  5. PSME_00044830-RA

PSME_00044830-RA


Description : (at3g12060 : 356.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).; TRICHOME BIREFRINGENCE-LIKE 1 (TBL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G06700.1); Has 1352 Blast hits to 1335 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 1346; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 644.0) & (original description: no original description)


Gene families : OG_42_0000293 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00044830-RA
Cluster HCCA clusters: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
A4A49_06264 No alias protein trichome birefringence 0.05 Orthogroups_2024-Update
A4A49_15386 No alias protein trichome birefringence 0.02 Orthogroups_2024-Update
Bradi3g23055 No alias TRICHOME BIREFRINGENCE-LIKE 8 0.03 Orthogroups_2024-Update
Brara.B00219.1 No alias polysaccharide O-acetyltransferase *(TBR) 0.02 Orthogroups_2024-Update
Glyma.01G028600 No alias Plant protein of unknown function (DUF828) 0.02 Orthogroups_2024-Update
Glyma.09G109600 No alias Plant protein of unknown function (DUF828) 0.03 Orthogroups_2024-Update
Glyma.10G293600 No alias Plant protein of unknown function (DUF828) 0.03 Orthogroups_2024-Update
Glyma.17G016100 No alias TRICHOME BIREFRINGENCE-LIKE 11 0.04 Orthogroups_2024-Update
LOC_Os06g10560 No alias leaf senescence related protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_459495g0010 No alias (at1g60790 : 280.0) Encodes a member of the TBL... 0.04 Orthogroups_2024-Update
MA_7200g0010 No alias (at3g06080 : 276.0) Encodes a member of the TBL... 0.03 Orthogroups_2024-Update
PSME_00020911-RA No alias (at5g06700 : 355.0) Encodes a member of the TBL... 0.04 Orthogroups_2024-Update
PSME_00037121-RA No alias (at5g19160 : 455.0) Encodes a member of the TBL... 0.04 Orthogroups_2024-Update
Potri.001G010900 No alias Plant protein of unknown function (DUF828) 0.03 Orthogroups_2024-Update
Potri.006G193900 No alias Plant protein of unknown function (DUF828) 0.04 Orthogroups_2024-Update
Pp1s309_78V6 No alias af361591_1 at5g06230 mbl20_11 0.02 Orthogroups_2024-Update
Sopen10g029530 No alias GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR025846 PMR5_N_dom 168 220
IPR026057 PC-Esterase 259 481
No external refs found!