Sopen06g011880

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g011880
Cluster	HCCA clusters: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358542	No alias	Function unknown	0.02	Orthogroups_2024-Update
Kfl00821_g9	kfl00821_g9_v1.1	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
LOC_Os01g45290	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g24400	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Mp8g07960.1	No alias	no hits & (original description: none)	0.02	Orthogroups_2024-Update
Solyc10g054430	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g010380	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen01g013800	No alias	Chromo (CHRromatin Organisation MOdifier) domain	0.04	Orthogroups_2024-Update
Sopen01g026660	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen04g020280	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen05g010930	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen08g020120	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen09g012210	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR023780	Chromo_domain	1343	1388
IPR001878	Znf_CCHC	1779	1795
IPR000477	RT_dom	2024	2169
IPR000477	RT_dom	665	785
IPR001584	Integrase_cat-core	1038	1149

External Links

No external refs found!