PSME_00044972-RA

Description : (at3g13960 : 158.0) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.; growth-regulating factor 5 (GRF5); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 2 (TAIR:AT4G37740.1); Has 2351 Blast hits to 1483 proteins in 168 species: Archae - 0; Bacteria - 108; Metazoa - 567; Fungi - 216; Plants - 548; Viruses - 4; Other Eukaryotes - 908 (source: NCBI BLink). & (reliability: 316.0) & (original description: no original description)

Gene families : OG_42_0000283 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000283_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00044972-RA
Cluster	HCCA clusters: Cluster_525

Target	Alias	Description	ECC score	Gene Family Method
A4A49_07457	No alias	growth-regulating factor 3	0.01	Orthogroups_2024-Update
A4A49_08365	No alias	growth-regulating factor 5	0.04	Orthogroups_2024-Update
A4A49_40190	No alias	growth-regulating factor 10	0.03	Orthogroups_2024-Update
At5g53660	No alias	Growth-regulating factor 7...	0.03	Orthogroups_2024-Update
Brara.B01438.1	No alias	component *(GRF) of GRF-GIF transcriptional complex	0.02	Orthogroups_2024-Update
Brara.D02218.1	No alias	component *(GRF) of GRF-GIF transcriptional complex	0.02	Orthogroups_2024-Update
Brara.E02725.1	No alias	component *(GRF) of GRF-GIF transcriptional complex	0.03	Orthogroups_2024-Update
Glyma.01G144900	No alias	growth-regulating factor 9	0.02	Orthogroups_2024-Update
Glyma.10G067200	No alias	growth-regulating factor 3	0.04	Orthogroups_2024-Update
Glyma.17G232600	No alias	growth-regulating factor 1	0.02	Orthogroups_2024-Update
HORVU6Hr1G065740.4	No alias	component *(GRF) of GRF-GIF transcriptional complex	0.02	Orthogroups_2024-Update
Potri.002G115300	No alias	growth-regulating factor 2	0.03	Orthogroups_2024-Update
Sobic.004G269900.2	No alias	component *(GRF) of GRF-GIF transcriptional complex	0.02	Orthogroups_2024-Update
Solyc07g041640	No alias	Growth-regulating factor-like protein (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update
Solyc08g079800	No alias	Growth-regulating factor (AHRD V3.3 - B6UGM8_MAIZE)	0.03	Orthogroups_2024-Update
Sopen04g031110	No alias	WRC	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004143	diacylglycerol kinase activity	IEP	Predicted GO
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predicted GO
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	Predicted GO
BP	GO:0015977	carbon fixation	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR014977	WRC_dom	313	355
IPR014978	Gln-Leu-Gln_QLQ	242	276

External Links

No external refs found!

PSME_00044972-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation