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  5. PSME_00045169-RA

PSME_00045169-RA


Description : (at3g09650 : 467.0) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.; HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 43769 Blast hits to 13527 proteins in 285 species: Archae - 3; Bacteria - 26; Metazoa - 343; Fungi - 654; Plants - 41314; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink). & (q76c99|rf1_orysa : 128.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 934.0) & (original description: no original description)


Gene families : OG_42_0004570 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045169-RA
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
116559 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Potri.016G085300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s128_117V6 No alias pentatricopeptiderepeat-containing protein 0.03 Orthogroups_2024-Update
Sopen09g002180 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g002200 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 315 361
IPR002885 Pentatricopeptide_repeat 209 256
IPR002885 Pentatricopeptide_repeat 176 204
IPR002885 Pentatricopeptide_repeat 139 165
IPR002885 Pentatricopeptide_repeat 281 309
IPR002885 Pentatricopeptide_repeat 3 32
No external refs found!