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  5. PSME_00045170-RA

PSME_00045170-RA


Description : (at3g09650 : 545.0) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.; HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 43769 Blast hits to 13527 proteins in 285 species: Archae - 3; Bacteria - 26; Metazoa - 343; Fungi - 654; Plants - 41314; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink). & (q76c99|rf1_orysa : 134.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1090.0) & (original description: no original description)


Gene families : OG_42_0004570 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045170-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
A4A49_07185 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.03 Orthogroups_2024-Update
Brara.E03075.1 No alias plastidial transcript stability factor *(HCF152) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 331 360
IPR002885 Pentatricopeptide_repeat 440 468
IPR002885 Pentatricopeptide_repeat 298 324
IPR002885 Pentatricopeptide_repeat 368 415
IPR002885 Pentatricopeptide_repeat 474 520
IPR002885 Pentatricopeptide_repeat 141 191
No external refs found!