PSME_00045260-RA

Description : (at1g12220 : 264.0) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 528.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00045260-RA
Cluster	HCCA clusters: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
Bradi5g15560	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
MA_10431079g0020	No alias	(at1g12280 : 99.8) LRR and NB-ARC domains-containing...	0.02	Orthogroups_2024-Update
MA_5225445g0010	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
MA_549555g0010	No alias	no hits & (original description: no original description)	0.05	Orthogroups_2024-Update
PSME_00004450-RA	No alias	(at4g10780 : 156.0) LRR and NB-ARC domains-containing...	0.06	Orthogroups_2024-Update
PSME_00011110-RA	No alias	(at5g43740 : 165.0) Disease resistance protein...	0.06	Orthogroups_2024-Update
PSME_00011883-RA	No alias	(at4g27220 : 218.0) NB-ARC domain-containing disease...	0.06	Orthogroups_2024-Update
PSME_00018989-RA	No alias	(at4g26090 : 240.0) Encodes a plasma membrane protein...	0.06	Orthogroups_2024-Update
PSME_00020046-RA	No alias	(at1g61180 : 156.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
PSME_00027915-RA	No alias	(at1g15890 : 191.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
PSME_00033628-RA	No alias	(at4g27220 : 254.0) NB-ARC domain-containing disease...	0.05	Orthogroups_2024-Update
PSME_00040363-RA	No alias	(at5g63020 : 222.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00043407-RA	No alias	(at4g26090 : 135.0) Encodes a plasma membrane protein...	0.03	Orthogroups_2024-Update
PSME_00048940-RA	No alias	(at4g27220 : 141.0) NB-ARC domain-containing disease...	0.04	Orthogroups_2024-Update
Potri.019G002800	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T028700	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Seita.7G165200.1	No alias	Unknown function	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Predicted GO
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Predicted GO
MF	GO:0016597	amino acid binding	IEP	Predicted GO
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Predicted GO
MF	GO:0030414	peptidase inhibitor activity	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
MF	GO:0061134	peptidase regulator activity	IEP	Predicted GO
MF	GO:0061135	endopeptidase regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	550	609
IPR002182	NB-ARC	169	400

External Links

No external refs found!

PSME_00045260-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation