PSME_00045398-RA

Description : (at1g12280 : 140.0) LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). & (reliability: 262.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00045398-RA
Cluster	HCCA clusters: Cluster_250

Target	Alias	Description	ECC score	Gene Family Method
407881	No alias	NB-ARC domain-containing disease resistance protein	0.04	Orthogroups_2024-Update
At1g15890	No alias	Probable disease resistance protein At1g15890...	0.03	Orthogroups_2024-Update
At1g63350	No alias	Disease resistance protein (CC-NBS-LRR class) family...	0.04	Orthogroups_2024-Update
At5g43740	No alias	Probable disease resistance protein At5g43740...	0.02	Orthogroups_2024-Update
Bradi5g15560	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Brara.A02495.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.I01920.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Brara.I03376.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Brara.K00100.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
GRMZM2G032602	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
HORVU3Hr1G108500.3	No alias	Unknown function	0.04	Orthogroups_2024-Update
LOC_Os01g57870	No alias	disease resistance protein RPS2, putative, expressed	0.02	Orthogroups_2024-Update
MA_10430184g0010	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
MA_53162g0020	No alias	(at5g43740 : 114.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
MA_549555g0010	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
MA_733g0010	No alias	(at1g15890 : 90.1) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00004005-RA	No alias	(at1g15890 : 219.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00021517-RA	No alias	(at1g12210 : 150.0) RFL1 has high sequence similarity to...	0.04	Orthogroups_2024-Update
PSME_00050940-RA	No alias	(at1g12280 : 221.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
PSME_00056632-RA	No alias	(at1g61310 : 186.0) LRR and NB-ARC domains-containing...	0.03	Orthogroups_2024-Update
PSME_00056885-RA	No alias	(at4g27220 : 223.0) NB-ARC domain-containing disease...	0.05	Orthogroups_2024-Update
Potri.T013200	No alias	NB-ARC domain-containing disease resistance protein	0.04	Orthogroups_2024-Update
Potri.T013900	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T024900	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T026800	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.04	Orthogroups_2024-Update
Potri.T045200	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Seita.7G165000.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sopen08g004810	No alias	NB-ARC domain	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004126	cytidine deaminase activity	IEP	Predicted GO
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Predicted GO
BP	GO:0006216	cytidine catabolic process	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0009164	nucleoside catabolic process	IEP	Predicted GO
BP	GO:0009972	cytidine deamination	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0019239	deaminase activity	IEP	Predicted GO
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Predicted GO
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Predicted GO
BP	GO:0042454	ribonucleoside catabolic process	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
BP	GO:0046087	cytidine metabolic process	IEP	Predicted GO
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Predicted GO
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Predicted GO
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Predicted GO
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predicted GO
BP	GO:1901658	glycosyl compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	252	375

External Links

No external refs found!

PSME_00045398-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation