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  5. PSME_00045485-RA

PSME_00045485-RA


Description : (at1g03840 : 315.0) MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.; Magpie (MGP); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G44160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description)


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045485-RA
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
A4A49_07606 No alias protein shoot gravitropism 5 0.04 Orthogroups_2024-Update
A4A49_23823 No alias zinc finger protein magpie 0.03 Orthogroups_2024-Update
Bradi1g18370 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
Bradi3g51090 No alias indeterminate(ID)-domain 4 0.03 Orthogroups_2024-Update
Bradi5g18530 No alias indeterminate(ID)-domain 4 0.02 Orthogroups_2024-Update
Brara.G02764.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.I00888.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G123094 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.05G137000 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.05G248300 No alias C2H2-like zinc finger protein 0.05 Orthogroups_2024-Update
Glyma.06G287200 No alias C2H2-like zinc finger protein 0.04 Orthogroups_2024-Update
Glyma.08G056800 No alias C2H2-like zinc finger protein 0.04 Orthogroups_2024-Update
Glyma.08G092300 No alias indeterminate(ID)-domain 14 0.05 Orthogroups_2024-Update
Glyma.13G139000 No alias C2H2-like zinc finger protein 0.04 Orthogroups_2024-Update
Glyma.13G293800 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.15G024500 No alias indeterminate(ID)-domain 11 0.03 Orthogroups_2024-Update
Glyma.19G180400 No alias indeterminate(ID)-domain 4 0.03 Orthogroups_2024-Update
Glyma.20G005800 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
Glyma.20G109400 No alias indeterminate(ID)-domain 4 0.02 Orthogroups_2024-Update
Glyma.20G184000 No alias indeterminate(ID)-domain 4 0.03 Orthogroups_2024-Update
MA_10436688g0010 No alias (at1g68130 : 189.0) indeterminate(ID)-domain 14 (IDD14);... 0.05 Orthogroups_2024-Update
Potri.012G040200 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Seita.2G368500.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Solyc10g084180 No alias Zinc finger family protein (AHRD V3.3 *** S8C619_9LAMI) 0.03 Orthogroups_2024-Update
Solyc11g069240 No alias Zinc finger family protein (AHRD V3.3 *** S8C619_9LAMI) 0.06 Orthogroups_2024-Update
Sopen09g027420 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!