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  5. PSME_00045610-RA

PSME_00045610-RA


Description : (at2g32280 : 138.0) Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1); Has 170 Blast hits to 169 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 276.0) & (original description: no original description)


Gene families : OG_42_0002545 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045610-RA
Cluster HCCA clusters: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G062400 No alias Protein of unknown function (DUF1218) 0.04 Orthogroups_2024-Update
HORVU2Hr1G043980.7 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os07g36110 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_10427997g0010 No alias (at4g21310 : 122.0) Protein of unknown function... 0.03 Orthogroups_2024-Update
Potri.011G031500 No alias Protein of unknown function (DUF1218) 0.02 Orthogroups_2024-Update
Potri.T101000 No alias Protein of unknown function (DUF1218) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009606 DUF1218 57 144
No external refs found!