PSME_00045638-RA

Description : (at3g49010 : 335.0) Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).; breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 742 Blast hits to 736 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 161; Plants - 147; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). & (p41129|rl132_brana : 323.0) 60S ribosomal protein L13-2 (Cold-induced protein C24B) - Brassica napus (Rape) & (reliability: 670.0) & (original description: no original description)

Gene families : OG_42_0002061 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002061_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00045638-RA
Cluster	HCCA clusters: Cluster_233

Target	Alias	Description	ECC score	Gene Family Method
165483	No alias	breast basic conserved 1	0.04	Orthogroups_2024-Update
266648	No alias	breast basic conserved 1	0.02	Orthogroups_2024-Update
A4A49_61903	No alias	60s ribosomal protein l13-1	0.09	Orthogroups_2024-Update
Bradi3g01600	No alias	breast basic conserved 1	0.1	Orthogroups_2024-Update
Bradi3g16170	No alias	breast basic conserved 1	0.08	Orthogroups_2024-Update
Brara.A02197.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.F01634.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Brara.F02079.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Cre14.g630100	No alias	breast basic conserved 1	0.03	Orthogroups_2024-Update
Glyma.04G122700	No alias	breast basic conserved 1	0.06	Orthogroups_2024-Update
Glyma.09G214400	No alias	breast basic conserved 1	0.04	Orthogroups_2024-Update
Glyma.16G106300	No alias	breast basic conserved 1	0.05	Orthogroups_2024-Update
HORVU6Hr1G009400.2	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
HORVU7Hr1G067060.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Kfl00461_0040	kfl00461_0040_v1.1	(p41129\|rl132_brana : 229.0) 60S ribosomal protein L13-2...	0.04	Orthogroups_2024-Update
LOC_Os03g37970	No alias	ribosomal protein L13, putative, expressed	0.03	Orthogroups_2024-Update
MA_10430790g0030	No alias	(at3g49010 : 263.0) Encodes 60S ribosomal protein L13....	0.04	Orthogroups_2024-Update
Mp1g04920.1	No alias	component RPL13 of LSU proteome component	0.05	Orthogroups_2024-Update
Mp2g19790.1	No alias	component RPL13 of LSU proteome component	0.07	Orthogroups_2024-Update
Potri.013G027600	No alias	breast basic conserved 1	0.02	Orthogroups_2024-Update
Pp1s21_106V6	No alias	60s ribosomal protein l13-2	0.07	Orthogroups_2024-Update
Pp1s459_9V6	No alias	60s ribosomal protein l13-2	0.04	Orthogroups_2024-Update
Pp1s47_277V6	No alias	60s ribosomal protein l13-2	0.02	Orthogroups_2024-Update
Seita.5G275700.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Seita.5G276200.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Sobic.003G408100.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.009G065400.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.009G237200.1	No alias	component *(eL13) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Solyc08g075700	No alias	60S ribosomal protein L13 (AHRD V3.3 *** K4CMT7_SOLLC)	0.08	Orthogroups_2024-Update
Solyc12g096150	No alias	60S ribosomal protein L13 (AHRD V3.3 *** K4DH88_SOLLC)	0.08	Orthogroups_2024-Update
Sopen08g024350	No alias	Ribosomal protein L13e	0.08	Orthogroups_2024-Update
Sopen12g032030	No alias	Ribosomal protein L13e	0.05	Orthogroups_2024-Update
evm.model.contig_2033.18	No alias	(at3g49010 : 217.0) Encodes 60S ribosomal protein L13....	0.11	Orthogroups_2024-Update
evm.model.tig00020629.36	No alias	(p41128\|rl131_brana : 211.0) 60S ribosomal protein L13-1...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0001671	ATPase activator activity	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005777	peroxisome	IEP	Predicted GO
CC	GO:0005839	proteasome core complex	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
MF	GO:0019829	cation-transporting ATPase activity	IEP	Predicted GO
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0030145	manganese ion binding	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
CC	GO:0042579	microbody	IEP	Predicted GO
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predicted GO
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
MF	GO:0070003	threonine-type peptidase activity	IEP	Predicted GO
MF	GO:0098772	molecular function regulator	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	7	185

External Links

No external refs found!

PSME_00045638-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation