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  5. Sopen06g012360

Sopen06g012360


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g012360
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Mp8g07960.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Sopen00g001810 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g004560 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g028910 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g017540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g018490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g023460 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen06g008750 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen06g009810 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen07g004430 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen07g016540 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen10g008640 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen10g021770 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 162 258
IPR000477 RT_dom 719 879
IPR001584 Integrase_cat-core 1259 1370
No external refs found!