1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00045863-RA

PSME_00045863-RA


Description : (at3g53960 : 513.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G37900.1); Has 6025 Blast hits to 5886 proteins in 1158 species: Archae - 0; Bacteria - 2442; Metazoa - 501; Fungi - 426; Plants - 2213; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink). & (reliability: 972.0) & (original description: no original description)


Gene families : OG_42_0000015 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045863-RA
Cluster HCCA clusters: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
84173 No alias peptide transporter 1 0.02 Orthogroups_2024-Update
A4A49_23336 No alias protein nrt1 ptr family 7.3 0.03 Orthogroups_2024-Update
A4A49_28129 No alias protein nrt1 ptr family 5.7 0.02 Orthogroups_2024-Update
A4A49_37441 No alias protein nrt1 ptr family 6.3 0.02 Orthogroups_2024-Update
At1g32450 No alias Protein NRT1/ PTR FAMILY 7.3... 0.03 Orthogroups_2024-Update
At1g72140 No alias Protein NRT1/ PTR FAMILY 5.12... 0.04 Orthogroups_2024-Update
At2g02020 No alias Protein NRT1/ PTR FAMILY 8.4... 0.03 Orthogroups_2024-Update
Bradi2g24327 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g30380 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g28410 No alias peptide transporter 3 0.04 Orthogroups_2024-Update
Brara.A02760.1 No alias anion transporter *(NRT1/PTR) 0.03 Orthogroups_2024-Update
Brara.G01280.1 No alias anion transporter *(NRT1/PTR) 0.03 Orthogroups_2024-Update
GRMZM2G176253 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G003400 No alias peptide transporter 3 0.03 Orthogroups_2024-Update
Glyma.10G183900 No alias peptide transporter 3 0.03 Orthogroups_2024-Update
Glyma.11G031500 No alias nitrate transporter 1.1 0.02 Orthogroups_2024-Update
Glyma.11G235200 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G167700 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G153300 No alias nitrate transporter 1.5 0.02 Orthogroups_2024-Update
Glyma.18G021700 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G064900 No alias peptide transporter 1 0.04 Orthogroups_2024-Update
Glyma.20G206300 No alias peptide transporter 3 0.03 Orthogroups_2024-Update
HORVU3Hr1G010570.2 No alias anion transporter *(NRT1/PTR) 0.04 Orthogroups_2024-Update
Kfl00057_0100 kfl00057_0100_v1.... (at5g01180 : 590.0) Encodes a dipeptide transporter... 0.02 Orthogroups_2024-Update
LOC_Os01g04950 No alias peptide transporter PTR2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g65210 No alias proton-dependent oligopeptide transport, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g01290 No alias peptide transporter PTR2, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os03g51050 No alias peptide transporter PTR2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g50930 No alias peptide transporter PTR2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g33210 No alias peptide transporter PTR3-A, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436042g0010 No alias (at3g54140 : 356.0) Encodes a di- and tri-peptide... 0.03 Orthogroups_2024-Update
MA_135648g0010 No alias (at1g32450 : 667.0) Transmembrane nitrate transporter.... 0.04 Orthogroups_2024-Update
MA_54821g0010 No alias (at3g54140 : 359.0) Encodes a di- and tri-peptide... 0.08 Orthogroups_2024-Update
MA_93406g0010 No alias (at2g26690 : 573.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
Mp5g08940.1 No alias anion transporter (NRT1/PTR) 0.03 Orthogroups_2024-Update
PSME_00012939-RA No alias (at5g46050 : 614.0) Encodes a di- and tri-peptide... 0.03 Orthogroups_2024-Update
PSME_00017179-RA No alias (at3g54140 : 790.0) Encodes a di- and tri-peptide... 0.03 Orthogroups_2024-Update
Potri.001G145200 No alias nitrate transporter 1.5 0.03 Orthogroups_2024-Update
Potri.006G096800 No alias peptide transporter 1 0.03 Orthogroups_2024-Update
Potri.008G061100 No alias Major facilitator superfamily protein 0.03 Orthogroups_2024-Update
Pp1s114_7V6 No alias peptide transporter 0.02 Orthogroups_2024-Update
Seita.5G282900.1 No alias anion transporter *(NRT1/PTR) 0.03 Orthogroups_2024-Update
Sobic.001G276300.1 No alias anion transporter *(NRT1/PTR) 0.03 Orthogroups_2024-Update
Solyc09g014220 No alias Peptide transporter, putative (AHRD V3.3 *** B9T6M4_RICCO) 0.02 Orthogroups_2024-Update
Solyc10g084950 No alias Major facilitator superfamily protein (AHRD V3.3 *** AT2G37900.1) 0.02 Orthogroups_2024-Update
Solyc12g089230 No alias Peptide transporter (AHRD V3.3 *** A0A072V2Y9_MEDTR) 0.03 Orthogroups_2024-Update
Sopen01g036930 No alias POT family 0.04 Orthogroups_2024-Update
Sopen09g007100 No alias POT family 0.02 Orthogroups_2024-Update
Sopen09g033390 No alias POT family 0.03 Orthogroups_2024-Update
Sopen10g034410 No alias POT family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0022857 transmembrane transporter activity IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
InterPro domains Description Start Stop
IPR000109 POT_fam 147 578
No external refs found!