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  5. PSME_00045872-RA

PSME_00045872-RA


Description : (at1g32540 : 145.0) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.; lsd one like 1 (LOL1); FUNCTIONS IN: DNA binding; INVOLVED IN: induction of apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description)


Gene families : OG_42_0001639 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045872-RA
Cluster HCCA clusters: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Brara.E01775.1 No alias regulatory protein *(LSD/LOL) of programmed cell death 0.01 Orthogroups_2024-Update
HORVU5Hr1G011690.2 No alias regulatory protein *(LSD/LOL) of programmed cell death 0.02 Orthogroups_2024-Update
Sobic.001G158500.1 No alias regulatory protein *(LSD/LOL) of programmed cell death 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005735 Znf_LSD1 150 174
IPR005735 Znf_LSD1 74 98
IPR005735 Znf_LSD1 112 136
No external refs found!