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  5. PSME_00045900-RA

PSME_00045900-RA


Description : (at1g12220 : 213.0) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 426.0) & (original description: no original description)


Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045900-RA
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
At1g52660 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
At1g63350 No alias Disease resistance protein (CC-NBS-LRR class) family... 0.03 Orthogroups_2024-Update
At4g27220 No alias NB-ARC domain-containing disease resistance protein... 0.04 Orthogroups_2024-Update
Bradi5g15560 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Brara.A01692.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F00179.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G032602 No alias NB-ARC domain-containing disease resistance protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G089020.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g10910 No alias NB-ARC/LRR disease resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10321737g0010 No alias (at5g05400 : 123.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
MA_10436684g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_122523g0010 No alias (at1g12210 : 224.0) RFL1 has high sequence similarity to... 0.04 Orthogroups_2024-Update
MA_31961g0010 No alias (at5g63020 : 182.0) Disease resistance protein... 0.05 Orthogroups_2024-Update
MA_451961g0010 No alias (at1g12280 : 177.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
MA_53162g0020 No alias (at5g43740 : 114.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
MA_8325275g0010 No alias (at1g12220 : 93.2) Resistance gene, mediates resistance... 0.05 Orthogroups_2024-Update
MA_8400299g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_8869735g0010 No alias (at1g61300 : 128.0) LRR and NB-ARC domains-containing... 0.05 Orthogroups_2024-Update
MA_9234097g0010 No alias (at1g61190 : 91.3) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
PSME_00004005-RA No alias (at1g15890 : 219.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
PSME_00011883-RA No alias (at4g27220 : 218.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00021066-RA No alias (at1g12220 : 163.0) Resistance gene, mediates resistance... 0.03 Orthogroups_2024-Update
PSME_00030472-RA No alias (at1g15890 : 234.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00034315-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00056264-RA No alias (at1g63350 : 266.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
PSME_00056619-RA No alias (at4g27220 : 229.0) NB-ARC domain-containing disease... 0.05 Orthogroups_2024-Update
PSME_00056885-RA No alias (at4g27220 : 223.0) NB-ARC domain-containing disease... 0.05 Orthogroups_2024-Update
Potri.001G313301 No alias Disease resistance protein (CC-NBS-LRR class) family 0.03 Orthogroups_2024-Update
Potri.019G002800 No alias LRR and NB-ARC domains-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T003800 No alias NB-ARC domain-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T024900 No alias NB-ARC domain-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T026800 No alias LRR and NB-ARC domains-containing disease resistance protein 0.04 Orthogroups_2024-Update
Potri.T028700 No alias NB-ARC domain-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T045200 No alias LRR and NB-ARC domains-containing disease resistance protein 0.04 Orthogroups_2024-Update
Sobic.003G321300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G146500.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen11g003650 No alias NB-ARC domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002182 NB-ARC 162 401
No external refs found!