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  5. PSME_00045931-RA

PSME_00045931-RA


Description : (at5g47500 : 448.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p83218|pme_dauca : 172.0) Pectinesterase (EC 3.1.1.11) (Pectin methylesterase) (PE) - Daucus carota (Carrot) & (reliability: 896.0) & (original description: no original description)


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045931-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
81583 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_32955 No alias putative pectinesterase 53 0.03 Orthogroups_2024-Update
A4A49_38924 No alias putative pectinesterase 53 0.03 Orthogroups_2024-Update
At1g05310 No alias Probable pectinesterase 8... 0.02 Orthogroups_2024-Update
At3g17060 No alias Probable pectinesterase 67... 0.03 Orthogroups_2024-Update
Bradi4g00840 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G066300 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.01G209500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G294700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G299200 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G125100 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.17G141700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G022590.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
LOC_Os05g44600 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g12410 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
MA_10428610g0010 No alias (at5g19730 : 471.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Mp1g00190.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Mp2g19430.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Potri.014G117100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G017700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s112_177V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s118_31V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Pp1s175_19V6 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
Pp1s45_249V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s461_15V6 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
Pp1s55_167V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s67_157V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Pp1s67_89V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.2G137200.1 No alias pectin methylesterase 0.01 Orthogroups_2024-Update
Solyc01g079180 No alias Pectinesterase (AHRD V3.3 *** K4AXG4_SOLLC) 0.03 Orthogroups_2024-Update
Solyc09g091730 No alias Pectinesterase (AHRD V3.3 *** K4CWJ9_SOLLC) 0.02 Orthogroups_2024-Update
Solyc12g008530 No alias Pectinesterase (AHRD V3.3 *** K4DBU1_SOLLC) 0.02 Orthogroups_2024-Update
Sopen01g030950 No alias Pectinesterase 0.03 Orthogroups_2024-Update
Sopen07g033560 No alias Pectinesterase 0.03 Orthogroups_2024-Update
Sopen10g033270 No alias Pectinesterase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 47 336
No external refs found!