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  5. PSME_00045977-RA

PSME_00045977-RA


Description : (at1g21000 : 248.0) PLATZ transcription factor family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G76590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 496.0) & (original description: no original description)


Gene families : OG_42_0000211 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00045977-RA
Cluster HCCA clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
131111 No alias PLATZ transcription factor family protein 0.07 Orthogroups_2024-Update
425306 No alias PLATZ transcription factor family protein 0.03 Orthogroups_2024-Update
A4A49_35279 No alias hypothetical protein 0.01 Orthogroups_2024-Update
Brara.H00737.1 No alias PLATZ-type transcription factor 0.04 Orthogroups_2024-Update
LOC_Os01g33350 No alias zinc-binding protein, putative, expressed 0.01 Orthogroups_2024-Update
MA_10429334g0010 No alias (at2g12646 : 189.0) PLATZ transcription factor family... 0.03 Orthogroups_2024-Update
MA_12209g0020 No alias (at1g32700 : 239.0) PLATZ transcription factor family... 0.04 Orthogroups_2024-Update
Pp1s3_605V6 No alias zinc ion binding 0.02 Orthogroups_2024-Update
Seita.5G187400.1 No alias PLATZ-type transcription factor 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR006734 DUF597 66 137
No external refs found!