PSME_00046052-RA

Description : (at1g19210 : 89.0) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.; Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G74930.1); Has 5600 Blast hits to 5488 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5592; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (reliability: 178.0) & (original description: no original description)

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00046052-RA
Cluster	HCCA clusters: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
AC206951.3_FG016	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Brara.E02619.1	No alias	subgroup ERF-VIII transcription factor	0.03	Orthogroups_2024-Update
Brara.F02737.1	No alias	cutin and suberin biosynthesis transcription factor...	0.03	Orthogroups_2024-Update
Brara.H01292.1	No alias	subgroup ERF-III transcription factor	0.02	Orthogroups_2024-Update
Brara.H02229.1	No alias	transcription factor *(CRF) & subgroup ERF-VI...	0.04	Orthogroups_2024-Update
GRMZM2G137341	No alias	C-repeat/DRE binding factor 2	0.02	Orthogroups_2024-Update
GRMZM2G380377	No alias	dehydration response element B1A	0.02	Orthogroups_2024-Update
GRMZM5G846057	No alias	related to AP2 4	0.03	Orthogroups_2024-Update
Glyma.04G041200	No alias	DREB and EAR motif protein 3	0.04	Orthogroups_2024-Update
Glyma.15G004200	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Glyma.15G152000	No alias	ethylene-responsive element binding protein	0.03	Orthogroups_2024-Update
Glyma.19G142000	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
HORVU4Hr1G077360.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
LOC_Os02g32140	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g08500	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os04g34970	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os04g46220	No alias	ethylene-responsive transcription factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g06540	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
MA_959784g0010	No alias	(at1g19210 : 119.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
PSME_00005183-RA	No alias	(at5g47220 : 92.8) Encodes a member of the ERF (ethylene...	0.06	Orthogroups_2024-Update
PSME_00014384-RA	No alias	(at5g21960 : 93.6) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
PSME_00032588-RA	No alias	(at4g17490 : 92.8) Encodes a member of the ERF (ethylene...	0.04	Orthogroups_2024-Update
PSME_00038114-RA	No alias	(q9lw48\|erf5_nicsy : 94.4) Ethylene-responsive...	0.06	Orthogroups_2024-Update
PSME_00039617-RA	No alias	(at4g17500 : 120.0) Encodes a member of the ERF...	0.06	Orthogroups_2024-Update
PSME_00042946-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
PSME_00047383-RA	No alias	(at5g21960 : 119.0) encodes a member of the DREB...	0.1	Orthogroups_2024-Update
PSME_00054258-RA	No alias	no hits & (original description: no original description)	0.1	Orthogroups_2024-Update
Potri.001G181500	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.003G162500	No alias	related to AP2 6l	0.03	Orthogroups_2024-Update
Potri.009G101900	No alias	redox responsive transcription factor 1	0.02	Orthogroups_2024-Update
Potri.010G006800	No alias	ethylene-responsive element binding protein	0.02	Orthogroups_2024-Update
Potri.011G056900	No alias	ERF domain protein 12	0.02	Orthogroups_2024-Update
Potri.017G013700	No alias	erf domain protein 9	0.02	Orthogroups_2024-Update
Potri.019G131300	No alias	cytokinin response factor 4	0.02	Orthogroups_2024-Update
Pp1s31_112V6	No alias	ap2 erf domain-containing transcription factor	0.02	Orthogroups_2024-Update
Seita.1G323500.1	No alias	subgroup ERF-I transcription factor	0.03	Orthogroups_2024-Update
Seita.1G341100.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Seita.2G364700.1	No alias	transcription factor *(ERN1) & subgroup ERF-V...	0.03	Orthogroups_2024-Update
Seita.8G012200.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Seita.9G268700.1	No alias	subgroup ERF-I transcription factor	0.05	Orthogroups_2024-Update
Seita.9G516800.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Sobic.004G295500.1	No alias	subgroup ERF-III transcription factor	0.03	Orthogroups_2024-Update
Sobic.007G124100.1	No alias	subgroup ERF-I transcription factor	0.06	Orthogroups_2024-Update
Solyc02g077370	No alias	Ethylene Response Factor C.5	0.02	Orthogroups_2024-Update
Solyc04g007180	No alias	No description available	0.04	Orthogroups_2024-Update
Solyc09g075420	No alias	ethylene response factor E.1	0.02	Orthogroups_2024-Update
Solyc12g008350	No alias	dehydration responsive element binding protein 2	0.02	Orthogroups_2024-Update
Sopen12g003310	No alias	AP2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Predicted GO
MF	GO:0004602	glutathione peroxidase activity	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	213	261

External Links

No external refs found!

PSME_00046052-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation