1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00046328-RA

PSME_00046328-RA


Description : (at3g14810 : 231.0) mechanosensitive channel of small conductance-like 5 (MSL5); INVOLVED IN: transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1). & (reliability: 450.0) & (original description: no original description)


Gene families : OG_42_0000648 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00046328-RA
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G123728 No alias mechanosensitive channel of small conductance-like 5 0.03 Orthogroups_2024-Update
LOC_Os06g10410 No alias uncharacterized mscS family protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10428116g0010 No alias (at5g12080 : 486.0) mechanosensitive channel of small... 0.07 Orthogroups_2024-Update
PSME_00031352-RA No alias (at1g78610 : 734.0) mechanosensitive channel of small... 0.03 Orthogroups_2024-Update
Potri.002G015300 No alias Mechanosensitive ion channel family protein 0.03 Orthogroups_2024-Update
Seita.7G198000.1 No alias mechanosensitive ion channel *(MSL) 0.03 Orthogroups_2024-Update
Sopen04g035690 No alias Mechanosensitive ion channel 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR006685 MscS_channel 48 181
No external refs found!