1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00046511-RA

PSME_00046511-RA


Description : (p0c132|iaa30_orysa : 213.0) Auxin-responsive protein IAA30 (Indoleacetic acid-induced protein 30) - Oryza sativa (Rice) & (at4g29080 : 202.0) phytochrome-associated protein 2 (PAP2); phytochrome-associated protein 2 (PAP2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indoleacetic acid-induced protein 8 (TAIR:AT2G22670.4); Has 2237 Blast hits to 2234 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2235; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)


Gene families : OG_42_0000083 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00046511-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_02603 No alias auxin-responsive protein iaa4 0.05 Orthogroups_2024-Update
Bradi2g31820 No alias phytochrome-associated protein 2 0.03 Orthogroups_2024-Update
Mp6g05000.1 No alias Auxin-responsive protein IAA17 OS=Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Sopen03g039270 No alias AUX/IAA family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 60 164
IPR033389 AUX/IAA_dom 167 275
No external refs found!