1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00046565-RA

PSME_00046565-RA


Description : (at2g22660 : 275.0) Protein of unknown function (duplicated DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 550.0) & (original description: no original description)


Gene families : OG_42_0001244 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001244_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00046565-RA
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Brara.A02260.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G051590.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00005607-RA No alias (at4g37900 : 362.0) Protein of unknown function... 0.03 Orthogroups_2024-Update
Pp1s314_5V6 No alias glycine-rich protein 0.02 Orthogroups_2024-Update
Pp1s50_185V6 No alias F14G9.16; expressed protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
InterPro domains Description Start Stop
IPR009836 GRDP-like 11 94
IPR009836 GRDP-like 90 235
No external refs found!